miRNA display CGI


Results 161 - 180 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 134046 0.68 0.758471
Target:  5'- gCGGcGCCgcccgcgGCCGCgGCGCCcGGCGUGGa -3'
miRNA:   3'- gGCCuCGG-------UGGCG-CGCGGuUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 99427 0.68 0.749734
Target:  5'- gCGGuAGCCGCauaCGCuGCGCCA-GCGUGGg -3'
miRNA:   3'- gGCC-UCGGUG---GCG-CGCGGUuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 75324 0.68 0.749734
Target:  5'- -gGGuaGGCCACCGCGCucCCGGGCGg-- -3'
miRNA:   3'- ggCC--UCGGUGGCGCGc-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 20271 0.68 0.739926
Target:  5'- aCGGcgaGGUCggcGCCGCGCGUCGgaAGCAUGAu -3'
miRNA:   3'- gGCC---UCGG---UGGCGCGCGGU--UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 61642 0.68 0.739926
Target:  5'- gCUGGAcugcagcgccGCCACCGCGgcCGCCAugaagguucgaGACAUGc -3'
miRNA:   3'- -GGCCU----------CGGUGGCGC--GCGGU-----------UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 70708 0.69 0.729026
Target:  5'- gCCGuGGCCGCCGacuacgaCGCGCCGGcaguggcgcGCGUAAa -3'
miRNA:   3'- -GGCcUCGGUGGC-------GCGCGGUU---------UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 46950 0.69 0.720031
Target:  5'- uCCGGcagcagaaAGCC-CCGCGCccggGCCAAGCGc-- -3'
miRNA:   3'- -GGCC--------UCGGuGGCGCG----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 120996 0.69 0.709964
Target:  5'- cCCGGccGCCGCUGCGCaGCCGgccggaGACAc-- -3'
miRNA:   3'- -GGCCu-CGGUGGCGCG-CGGU------UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 88454 0.69 0.699828
Target:  5'- gCCGcGGGCCccgACCGCGCGC---GCGUGc -3'
miRNA:   3'- -GGC-CUCGG---UGGCGCGCGguuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 69628 0.68 0.759436
Target:  5'- gCCGGgcGGCCGCacugCGCGCGCCGccccACAc-- -3'
miRNA:   3'- -GGCC--UCGGUG----GCGCGCGGUu---UGUauu -5'
6424 3' -56.3 NC_001847.1 + 36815 0.68 0.766159
Target:  5'- uUCGuGcGCCACCgGCGCGCCGacugggggcuggcgGACGUGc -3'
miRNA:   3'- -GGC-CuCGGUGG-CGCGCGGU--------------UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 88021 0.76 0.330717
Target:  5'- cCCGG-GCCACgCGCGCGUuaagaaccugcgCAAACAUGAa -3'
miRNA:   3'- -GGCCuCGGUG-GCGCGCG------------GUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 16371 0.78 0.267157
Target:  5'- gCCGGuGCCgcucacACCGCGCGCCAcaaccgcGACGUGu -3'
miRNA:   3'- -GGCCuCGG------UGGCGCGCGGU-------UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 68470 0.79 0.231466
Target:  5'- gCCGGGGCCccGCCGCGCgggcgcaagcgcGCCAGGCAg-- -3'
miRNA:   3'- -GGCCUCGG--UGGCGCG------------CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 88222 0.68 0.787812
Target:  5'- cCCGGAGCCcgggcCCGaCGCGCCc------- -3'
miRNA:   3'- -GGCCUCGGu----GGC-GCGCGGuuuguauu -5'
6424 3' -56.3 NC_001847.1 + 134550 0.68 0.787812
Target:  5'- gCGGAGCgGCCGCGgaggGCCAGGa---- -3'
miRNA:   3'- gGCCUCGgUGGCGCg---CGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 34605 0.68 0.787812
Target:  5'- gCUGGcGCgGCgGCGCGCCGAGgAa-- -3'
miRNA:   3'- -GGCCuCGgUGgCGCGCGGUUUgUauu -5'
6424 3' -56.3 NC_001847.1 + 44759 0.68 0.778484
Target:  5'- aCCGGgccuuccuGGCCuccauCCGCGCGCUuGGCGg-- -3'
miRNA:   3'- -GGCC--------UCGGu----GGCGCGCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 74447 0.68 0.769022
Target:  5'- aCGGGcGCCGCUaccagGUGaCGCCGGACGUGc -3'
miRNA:   3'- gGCCU-CGGUGG-----CGC-GCGGUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 47570 0.68 0.769022
Target:  5'- cCCGGcGGCCGCgCaCGCGCCGAGgAa-- -3'
miRNA:   3'- -GGCC-UCGGUG-GcGCGCGGUUUgUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.