Results 101 - 120 of 611 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 82631 | 0.66 | 0.848603 |
Target: 5'- cCCGGGccgcGCgGCCGCGCGCUccguCAg-- -3' miRNA: 3'- -GGCCU----CGgUGGCGCGCGGuuu-GUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 69517 | 0.66 | 0.848603 |
Target: 5'- gCGGcgcAGCCaaGCCcUGCGCCGAGCAg-- -3' miRNA: 3'- gGCC---UCGG--UGGcGCGCGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 64014 | 0.66 | 0.848603 |
Target: 5'- gCCGGGGUCGgCGacguaCGCGCCGAAgAg-- -3' miRNA: 3'- -GGCCUCGGUgGC-----GCGCGGUUUgUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 23880 | 0.66 | 0.848603 |
Target: 5'- cCCGGcGCCGCCuccgacccgGCGCcGCCuccgacccGACAUGAu -3' miRNA: 3'- -GGCCuCGGUGG---------CGCG-CGGu-------UUGUAUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 96146 | 0.66 | 0.848603 |
Target: 5'- gCCGGAGCCggaACCGgG-GCCGGAa---- -3' miRNA: 3'- -GGCCUCGG---UGGCgCgCGGUUUguauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 104040 | 0.66 | 0.856545 |
Target: 5'- -aGGcauGCCACCGCGCuGCCcGGCc--- -3' miRNA: 3'- ggCCu--CGGUGGCGCG-CGGuUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 113046 | 0.66 | 0.856545 |
Target: 5'- gCCGGcagcAGCCGCaGCGCGUCGGcGCAc-- -3' miRNA: 3'- -GGCC----UCGGUGgCGCGCGGUU-UGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 91158 | 0.66 | 0.86428 |
Target: 5'- cUCGcuGGCCA-CGCGCGCCuuAUAUAGa -3' miRNA: 3'- -GGCc-UCGGUgGCGCGCGGuuUGUAUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 51909 | 0.66 | 0.86428 |
Target: 5'- gCCGccGCCccgGCCGCgGCGUCAAACAc-- -3' miRNA: 3'- -GGCcuCGG---UGGCG-CGCGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 48630 | 0.66 | 0.86428 |
Target: 5'- gCGGgcgcccAGCCGCCGCGCGaCgGuGCAg-- -3' miRNA: 3'- gGCC------UCGGUGGCGCGC-GgUuUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 12389 | 0.66 | 0.86428 |
Target: 5'- cUCGGGGCgCguguggucggugACCGCGCGCacCAAACGg-- -3' miRNA: 3'- -GGCCUCG-G------------UGGCGCGCG--GUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 1672 | 0.66 | 0.86428 |
Target: 5'- gCCGG-GCCGUCGCGCgGCCAGu----- -3' miRNA: 3'- -GGCCuCGGUGGCGCG-CGGUUuguauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 10185 | 0.66 | 0.86275 |
Target: 5'- gCCGGcuuuugcgcgccGCCGCCGC-CGCCGGGCc--- -3' miRNA: 3'- -GGCCu-----------CGGUGGCGcGCGGUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 60050 | 0.66 | 0.859664 |
Target: 5'- gCCGGGgcGCCGCCGacgaucuaauggugGCGCUAGugAUGg -3' miRNA: 3'- -GGCCU--CGGUGGCg-------------CGCGGUUugUAUu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 86093 | 0.66 | 0.856545 |
Target: 5'- cCCGcGGCCgugaGCUGCGCGCCAccACGg-- -3' miRNA: 3'- -GGCcUCGG----UGGCGCGCGGUu-UGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 85077 | 0.66 | 0.856545 |
Target: 5'- cCCGGGuCCgcGCCGCGCGCgGAcccGCGg-- -3' miRNA: 3'- -GGCCUcGG--UGGCGCGCGgUU---UGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 73877 | 0.66 | 0.856545 |
Target: 5'- gCGGcGCC-CgCGCGCGCCGcgGACGc-- -3' miRNA: 3'- gGCCuCGGuG-GCGCGCGGU--UUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 69327 | 0.66 | 0.856545 |
Target: 5'- gCCGuGGGCCagcaGCCGCGCaGCUagcgGAGCGUc- -3' miRNA: 3'- -GGC-CUCGG----UGGCGCG-CGG----UUUGUAuu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 54284 | 0.66 | 0.856545 |
Target: 5'- gCCGGAcgGCCucgaCGCGCGCCGc------ -3' miRNA: 3'- -GGCCU--CGGug--GCGCGCGGUuuguauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 1503 | 0.66 | 0.856545 |
Target: 5'- cUCGGGGUagaGCCGCGCG-UAGGCGg-- -3' miRNA: 3'- -GGCCUCGg--UGGCGCGCgGUUUGUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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