miRNA display CGI


Results 121 - 140 of 611 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 84292 0.68 0.769022
Target:  5'- cCCGGGcGCCGaaGCGCGCUGuacgacGCGUAGu -3'
miRNA:   3'- -GGCCU-CGGUggCGCGCGGUu-----UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 72551 0.68 0.769022
Target:  5'- gCGGGGCgauCGCCGCGgGgCAAACGc-- -3'
miRNA:   3'- gGCCUCG---GUGGCGCgCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 130861 0.68 0.769022
Target:  5'- -aGGcGCCGgCGCGCGCCu--CGUGg -3'
miRNA:   3'- ggCCuCGGUgGCGCGCGGuuuGUAUu -5'
6424 3' -56.3 NC_001847.1 + 101016 0.68 0.769022
Target:  5'- gCGGcGGCCACCGCggcagGCGCC--GCAg-- -3'
miRNA:   3'- gGCC-UCGGUGGCG-----CGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 100355 0.68 0.769022
Target:  5'- gCCGcGGGUCguaGCCGCGCGCC--GCGg-- -3'
miRNA:   3'- -GGC-CUCGG---UGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 61249 0.68 0.769022
Target:  5'- gCUGG-GCCAUCGCuGCGCgGGGCGc-- -3'
miRNA:   3'- -GGCCuCGGUGGCG-CGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 13421 0.68 0.769022
Target:  5'- aCGGGcgcGCCAgCGCGCGCCGu------ -3'
miRNA:   3'- gGCCU---CGGUgGCGCGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 58058 0.68 0.76807
Target:  5'- gCGcGGGCCGCCgauuggcgcgcgcGCGCGCCGcAGCGg-- -3'
miRNA:   3'- gGC-CUCGGUGG-------------CGCGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 95508 0.68 0.759436
Target:  5'- cCCGuGGGCCugGCgGgCGCGCCAGGCu--- -3'
miRNA:   3'- -GGC-CUCGG--UGgC-GCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 52243 0.68 0.759436
Target:  5'- cCCGG-G-CGCCGCGCGCCGcGGCu--- -3'
miRNA:   3'- -GGCCuCgGUGGCGCGCGGU-UUGuauu -5'
6424 3' -56.3 NC_001847.1 + 132103 0.68 0.759436
Target:  5'- cCUGcGGCUGCUGgGCGCgCAGACGUGAc -3'
miRNA:   3'- -GGCcUCGGUGGCgCGCG-GUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 81029 0.68 0.759436
Target:  5'- gCCGGugcugcGCCucCCGCGCGgCGAGCGc-- -3'
miRNA:   3'- -GGCCu-----CGGu-GGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 28635 0.68 0.759436
Target:  5'- gCGGGGCCcgcgGCCGUguucGUGCCGGAgAUGGg -3'
miRNA:   3'- gGCCUCGG----UGGCG----CGCGGUUUgUAUU- -5'
6424 3' -56.3 NC_001847.1 + 19457 0.68 0.759436
Target:  5'- gCCGGgccAGCCgcuccGCCGCGCGCUc--CAUGGg -3'
miRNA:   3'- -GGCC---UCGG-----UGGCGCGCGGuuuGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 40934 0.68 0.759436
Target:  5'- gCCGcGAGCUccGCCGCGCGCa--GCGc-- -3'
miRNA:   3'- -GGC-CUCGG--UGGCGCGCGguuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 29025 0.68 0.759436
Target:  5'- gCGGcGCCcgcGCCGCGCucGCCGAGCu--- -3'
miRNA:   3'- gGCCuCGG---UGGCGCG--CGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 31233 0.68 0.758471
Target:  5'- gCGGcGCCgcccgcgGCCGCgGCGCCcGGCGUGGa -3'
miRNA:   3'- gGCCuCGG-------UGGCG-CGCGGuUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 73148 0.68 0.749734
Target:  5'- cCUGGAGgagGCgGCGCGCCGGGCGg-- -3'
miRNA:   3'- -GGCCUCgg-UGgCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 36942 0.68 0.749734
Target:  5'- cCCGGAGCU-CCGCG-GCCGucGCAc-- -3'
miRNA:   3'- -GGCCUCGGuGGCGCgCGGUu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 1252 0.68 0.749734
Target:  5'- aCCGGccGCaGCgGCGCGCCGAGCc--- -3'
miRNA:   3'- -GGCCu-CGgUGgCGCGCGGUUUGuauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.