miRNA display CGI


Results 141 - 160 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 88959 0.68 0.749734
Target:  5'- gCCGGccGCUACCGCGUGC---GCGUGGu -3'
miRNA:   3'- -GGCCu-CGGUGGCGCGCGguuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 79415 0.68 0.749734
Target:  5'- gCCGGA-CCACCGUGgCGCCcgaGGGCGg-- -3'
miRNA:   3'- -GGCCUcGGUGGCGC-GCGG---UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 74503 0.68 0.749734
Target:  5'- gCCGc-GCCugcGCCGCGCGCUGGACGa-- -3'
miRNA:   3'- -GGCcuCGG---UGGCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 35522 0.68 0.749734
Target:  5'- gCCGGGGCUuguauuuuuccGCCGgacugcagcccCGCGCCAAGCu--- -3'
miRNA:   3'- -GGCCUCGG-----------UGGC-----------GCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 13007 0.68 0.749734
Target:  5'- gCGGcGCC-CUGCGCGCCGGcCGUc- -3'
miRNA:   3'- gGCCuCGGuGGCGCGCGGUUuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 65711 0.68 0.749734
Target:  5'- gCCGuccGCCACCGcCGCGCUGAGCc--- -3'
miRNA:   3'- -GGCcu-CGGUGGC-GCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 91896 0.68 0.739926
Target:  5'- cCCGGGcgccgcGCCGcCCGCGCGCCcccaccgccaccGGGCAa-- -3'
miRNA:   3'- -GGCCU------CGGU-GGCGCGCGG------------UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 119390 0.68 0.739926
Target:  5'- gCGG-GCCGCC-CGCGUC-GGCAUAGg -3'
miRNA:   3'- gGCCuCGGUGGcGCGCGGuUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 112332 0.68 0.739926
Target:  5'- -gGGAGCgGCCGC-CGCCGGcccGCAUc- -3'
miRNA:   3'- ggCCUCGgUGGCGcGCGGUU---UGUAuu -5'
6424 3' -56.3 NC_001847.1 + 1735 0.68 0.739926
Target:  5'- gCCGcGGCCAgCCGCGCG-CAGAgGUAc -3'
miRNA:   3'- -GGCcUCGGU-GGCGCGCgGUUUgUAUu -5'
6424 3' -56.3 NC_001847.1 + 1112 0.68 0.739926
Target:  5'- gCGGcGCCGCCGCG-GCCuccAGCAc-- -3'
miRNA:   3'- gGCCuCGGUGGCGCgCGGu--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104189 0.68 0.739926
Target:  5'- -aGGGGgCACCGCGCGCgcAGCGc-- -3'
miRNA:   3'- ggCCUCgGUGGCGCGCGguUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101940 0.68 0.739926
Target:  5'- gCC-GAGCCAcCCGCGCcGCCAAGuCGg-- -3'
miRNA:   3'- -GGcCUCGGU-GGCGCG-CGGUUU-GUauu -5'
6424 3' -56.3 NC_001847.1 + 56408 0.68 0.739926
Target:  5'- gCCGGcgcggggacAGCCACCGCGuCGCgGAAgAc-- -3'
miRNA:   3'- -GGCC---------UCGGUGGCGC-GCGgUUUgUauu -5'
6424 3' -56.3 NC_001847.1 + 111347 0.68 0.73894
Target:  5'- gUCGGuGGCCGCCGCgcugggcgaccucGCGcCCGGGCAUc- -3'
miRNA:   3'- -GGCC-UCGGUGGCG-------------CGC-GGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 71469 0.69 0.730022
Target:  5'- uCCGGGGgCAUgGCG-GCCGcgAGCAUGAg -3'
miRNA:   3'- -GGCCUCgGUGgCGCgCGGU--UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 56948 0.69 0.730022
Target:  5'- aCCGcAGCCGCCGCGagaaGCCuacgcacGCGUAc -3'
miRNA:   3'- -GGCcUCGGUGGCGCg---CGGuu-----UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 93867 0.69 0.730022
Target:  5'- gCCGGcgcgcuGCUgACCGCGCGCCG-GCAa-- -3'
miRNA:   3'- -GGCCu-----CGG-UGGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 127915 0.69 0.720031
Target:  5'- cCCGaccAGCCGCUGCaGCGCCAugGACGg-- -3'
miRNA:   3'- -GGCc--UCGGUGGCG-CGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 65882 0.69 0.720031
Target:  5'- cCCGcGGCCGCCGC-CaGCCGcGCGUAGu -3'
miRNA:   3'- -GGCcUCGGUGGCGcG-CGGUuUGUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.