miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 76872 1.08 0.000342
Target:  5'- gCGCCCUGCCGUGCCCGGGUGGCGCCGa -3'
miRNA:   3'- -GCGGGACGGCACGGGCCCACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 19847 0.81 0.035923
Target:  5'- gCGCCCUugGcCCGcGCCCGGG-GGCGCCGg -3'
miRNA:   3'- -GCGGGA--C-GGCaCGGGCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 10555 0.79 0.047511
Target:  5'- gCGCCCgGCCG-GCgCCGGGcccGGCGCCGg -3'
miRNA:   3'- -GCGGGaCGGCaCG-GGCCCa--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 113368 0.79 0.047511
Target:  5'- gCGCCCgGCCG-GCgCCGGGcccGGCGCCGg -3'
miRNA:   3'- -GCGGGaCGGCaCG-GGCCCa--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 74109 0.78 0.063986
Target:  5'- uGCCCggggcgGCCGcGCCCGGGgaugugacgcgcGGCGCCGa -3'
miRNA:   3'- gCGGGa-----CGGCaCGGGCCCa-----------CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 134177 0.77 0.065943
Target:  5'- aGCCCcGCCG-GCCCGGGUgccGGCGCa- -3'
miRNA:   3'- gCGGGaCGGCaCGGGCCCA---CCGCGgc -5'
6424 5' -67.3 NC_001847.1 + 31364 0.77 0.065943
Target:  5'- aGCCCcGCCG-GCCCGGGUgccGGCGCa- -3'
miRNA:   3'- gCGGGaCGGCaCGGGCCCA---CCGCGgc -5'
6424 5' -67.3 NC_001847.1 + 3237 0.76 0.078556
Target:  5'- cCGCCCgcGCCGUGCucgCCGGcGgcaggGGCGCCGg -3'
miRNA:   3'- -GCGGGa-CGGCACG---GGCC-Ca----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 106050 0.76 0.078556
Target:  5'- cCGCCCgcGCCGUGCucgCCGGcGgcaggGGCGCCGg -3'
miRNA:   3'- -GCGGGa-CGGCACG---GGCC-Ca----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 85064 0.76 0.082565
Target:  5'- aGCCUUgGCCGcGCCCGGGUccGCGCCGc -3'
miRNA:   3'- gCGGGA-CGGCaCGGGCCCAc-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 71595 0.76 0.088947
Target:  5'- cCGCCCggcGCCG-GCCCaGGcGGCGCCa -3'
miRNA:   3'- -GCGGGa--CGGCaCGGGcCCaCCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 39832 0.76 0.088947
Target:  5'- gGCCCUGCCGgcgccgcGCCUGGa-GGCGCCa -3'
miRNA:   3'- gCGGGACGGCa------CGGGCCcaCCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 63537 0.75 0.091176
Target:  5'- cCGCgCUGCUGgcgccGCCUGGGccGGCGCCGg -3'
miRNA:   3'- -GCGgGACGGCa----CGGGCCCa-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 66155 0.75 0.100635
Target:  5'- uCGUCCgaGCCGcUGucuCCCGGGcUGGCGCCGg -3'
miRNA:   3'- -GCGGGa-CGGC-AC---GGGCCC-ACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 69875 0.75 0.10163
Target:  5'- gGCCCgccgcugcggaccgGCCGcggGCCCGGGUGGCggaaaagcGCCGc -3'
miRNA:   3'- gCGGGa-------------CGGCa--CGGGCCCACCG--------CGGC- -5'
6424 5' -67.3 NC_001847.1 + 78275 0.75 0.105705
Target:  5'- gGCCCguugGCCGcGCCCGGGccgccgGGCGCa- -3'
miRNA:   3'- gCGGGa---CGGCaCGGGCCCa-----CCGCGgc -5'
6424 5' -67.3 NC_001847.1 + 19662 0.75 0.105705
Target:  5'- gGCCCgGCCGccggaaacUGCgaCCGGGUGcGCGCCGu -3'
miRNA:   3'- gCGGGaCGGC--------ACG--GGCCCAC-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 38105 0.74 0.108329
Target:  5'- aGCCCggacGCCGcUGCCCGGcGgGuGCGCCGg -3'
miRNA:   3'- gCGGGa---CGGC-ACGGGCC-CaC-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 11314 0.74 0.113761
Target:  5'- gCGCCC-GCCGagGCCggCGGGcggcUGGCGCCGg -3'
miRNA:   3'- -GCGGGaCGGCa-CGG--GCCC----ACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 88681 0.73 0.125397
Target:  5'- gGCCCUGUacguaaGUGCCCuGGcGGCGCUGc -3'
miRNA:   3'- gCGGGACGg-----CACGGGcCCaCCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.