Results 1 - 20 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 1 | 0.66 | 0.403611 |
Target: 5'- gGCCCaGCCcccGCgCGGGgGGCGCgGa -3' miRNA: 3'- gCGGGaCGGca-CGgGCCCaCCGCGgC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 150 | 0.67 | 0.357447 |
Target: 5'- gGCCCcgGCCGggggGCCgGGGUucuGCGUCu -3' miRNA: 3'- gCGGGa-CGGCa---CGGgCCCAc--CGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 218 | 0.69 | 0.258911 |
Target: 5'- gCGCCCggggGCCcgaGCCCGGGccucGCGCCc -3' miRNA: 3'- -GCGGGa---CGGca-CGGGCCCac--CGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 260 | 0.73 | 0.13162 |
Target: 5'- gCGCCCagggGCCcgaGCCCGGG-GGCcGCCGa -3' miRNA: 3'- -GCGGGa---CGGca-CGGGCCCaCCG-CGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 700 | 0.73 | 0.138127 |
Target: 5'- uGCCCUGCCGcaaguuuaUGCUguaucugaugCGcGGUGGUGCCGu -3' miRNA: 3'- gCGGGACGGC--------ACGG----------GC-CCACCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 750 | 0.68 | 0.275467 |
Target: 5'- gGCCCcccuagggcgagGCCG-GCCCGccgccGGcGGCGCCGg -3' miRNA: 3'- gCGGGa-----------CGGCaCGGGC-----CCaCCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 910 | 0.68 | 0.315115 |
Target: 5'- cCGCCg-GCCGccGCCCGcc-GGCGCCGg -3' miRNA: 3'- -GCGGgaCGGCa-CGGGCccaCCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 939 | 0.71 | 0.188055 |
Target: 5'- aGCCCgagcCCGcGCCCGGGgacgacuGCGCCGg -3' miRNA: 3'- gCGGGac--GGCaCGGGCCCac-----CGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 1090 | 0.72 | 0.155704 |
Target: 5'- aCGCCgggcGCCGcgGCCgCGGGcGGCGCCGc -3' miRNA: 3'- -GCGGga--CGGCa-CGG-GCCCaCCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 2745 | 0.68 | 0.295412 |
Target: 5'- gGCCC--CCG-GCCCGGcGcggcGGCGCCGg -3' miRNA: 3'- gCGGGacGGCaCGGGCC-Ca---CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 2866 | 0.66 | 0.387808 |
Target: 5'- gCGCCCagGCCGacGCgCGGGccgccGCGCCGc -3' miRNA: 3'- -GCGGGa-CGGCa-CGgGCCCac---CGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 3049 | 0.68 | 0.276681 |
Target: 5'- gGCCCggaGCaCGcGCuCCGGGU-GCGCCGc -3' miRNA: 3'- gCGGGa--CG-GCaCG-GGCCCAcCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 3117 | 0.7 | 0.231379 |
Target: 5'- gGCCCgccgcgGCCGagaGCaCCGGGagcccggcGGCGCCGg -3' miRNA: 3'- gCGGGa-----CGGCa--CG-GGCCCa-------CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 3237 | 0.76 | 0.078556 |
Target: 5'- cCGCCCgcGCCGUGCucgCCGGcGgcaggGGCGCCGg -3' miRNA: 3'- -GCGGGa-CGGCACG---GGCC-Ca----CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 3396 | 0.7 | 0.211166 |
Target: 5'- aGCCCUccgcaagcaGCgGgagagcaGCCCGGG-GGCGCCa -3' miRNA: 3'- gCGGGA---------CGgCa------CGGGCCCaCCGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 3931 | 0.69 | 0.236681 |
Target: 5'- gCGCCCgcGCUGgcGCCgcggCGGGgggGGCGCCGu -3' miRNA: 3'- -GCGGGa-CGGCa-CGG----GCCCa--CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 4001 | 0.68 | 0.308439 |
Target: 5'- gGCCCcGCgGgGCgCCGGGcccGGCGCCc -3' miRNA: 3'- gCGGGaCGgCaCG-GGCCCa--CCGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 4221 | 0.66 | 0.395658 |
Target: 5'- aGCCCUGCgCgGUG-CCGGcgcGCGCCGg -3' miRNA: 3'- gCGGGACG-G-CACgGGCCcacCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 4534 | 0.66 | 0.411664 |
Target: 5'- uGCCUcGCgGcgGCCgcccgCGGGUGGCGCgGc -3' miRNA: 3'- gCGGGaCGgCa-CGG-----GCCCACCGCGgC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 5442 | 0.68 | 0.308439 |
Target: 5'- -cCCCUGCgUGuUGCCCGacggcGGUGGCgGCCGc -3' miRNA: 3'- gcGGGACG-GC-ACGGGC-----CCACCG-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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