miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 1 0.66 0.403611
Target:  5'- gGCCCaGCCcccGCgCGGGgGGCGCgGa -3'
miRNA:   3'- gCGGGaCGGca-CGgGCCCaCCGCGgC- -5'
6424 5' -67.3 NC_001847.1 + 150 0.67 0.357447
Target:  5'- gGCCCcgGCCGggggGCCgGGGUucuGCGUCu -3'
miRNA:   3'- gCGGGa-CGGCa---CGGgCCCAc--CGCGGc -5'
6424 5' -67.3 NC_001847.1 + 218 0.69 0.258911
Target:  5'- gCGCCCggggGCCcgaGCCCGGGccucGCGCCc -3'
miRNA:   3'- -GCGGGa---CGGca-CGGGCCCac--CGCGGc -5'
6424 5' -67.3 NC_001847.1 + 260 0.73 0.13162
Target:  5'- gCGCCCagggGCCcgaGCCCGGG-GGCcGCCGa -3'
miRNA:   3'- -GCGGGa---CGGca-CGGGCCCaCCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 700 0.73 0.138127
Target:  5'- uGCCCUGCCGcaaguuuaUGCUguaucugaugCGcGGUGGUGCCGu -3'
miRNA:   3'- gCGGGACGGC--------ACGG----------GC-CCACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 750 0.68 0.275467
Target:  5'- gGCCCcccuagggcgagGCCG-GCCCGccgccGGcGGCGCCGg -3'
miRNA:   3'- gCGGGa-----------CGGCaCGGGC-----CCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 910 0.68 0.315115
Target:  5'- cCGCCg-GCCGccGCCCGcc-GGCGCCGg -3'
miRNA:   3'- -GCGGgaCGGCa-CGGGCccaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 939 0.71 0.188055
Target:  5'- aGCCCgagcCCGcGCCCGGGgacgacuGCGCCGg -3'
miRNA:   3'- gCGGGac--GGCaCGGGCCCac-----CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 1090 0.72 0.155704
Target:  5'- aCGCCgggcGCCGcgGCCgCGGGcGGCGCCGc -3'
miRNA:   3'- -GCGGga--CGGCa-CGG-GCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 2745 0.68 0.295412
Target:  5'- gGCCC--CCG-GCCCGGcGcggcGGCGCCGg -3'
miRNA:   3'- gCGGGacGGCaCGGGCC-Ca---CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 2866 0.66 0.387808
Target:  5'- gCGCCCagGCCGacGCgCGGGccgccGCGCCGc -3'
miRNA:   3'- -GCGGGa-CGGCa-CGgGCCCac---CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 3049 0.68 0.276681
Target:  5'- gGCCCggaGCaCGcGCuCCGGGU-GCGCCGc -3'
miRNA:   3'- gCGGGa--CG-GCaCG-GGCCCAcCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 3117 0.7 0.231379
Target:  5'- gGCCCgccgcgGCCGagaGCaCCGGGagcccggcGGCGCCGg -3'
miRNA:   3'- gCGGGa-----CGGCa--CG-GGCCCa-------CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 3237 0.76 0.078556
Target:  5'- cCGCCCgcGCCGUGCucgCCGGcGgcaggGGCGCCGg -3'
miRNA:   3'- -GCGGGa-CGGCACG---GGCC-Ca----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 3396 0.7 0.211166
Target:  5'- aGCCCUccgcaagcaGCgGgagagcaGCCCGGG-GGCGCCa -3'
miRNA:   3'- gCGGGA---------CGgCa------CGGGCCCaCCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 3931 0.69 0.236681
Target:  5'- gCGCCCgcGCUGgcGCCgcggCGGGgggGGCGCCGu -3'
miRNA:   3'- -GCGGGa-CGGCa-CGG----GCCCa--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 4001 0.68 0.308439
Target:  5'- gGCCCcGCgGgGCgCCGGGcccGGCGCCc -3'
miRNA:   3'- gCGGGaCGgCaCG-GGCCCa--CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 4221 0.66 0.395658
Target:  5'- aGCCCUGCgCgGUG-CCGGcgcGCGCCGg -3'
miRNA:   3'- gCGGGACG-G-CACgGGCCcacCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 4534 0.66 0.411664
Target:  5'- uGCCUcGCgGcgGCCgcccgCGGGUGGCGCgGc -3'
miRNA:   3'- gCGGGaCGgCa-CGG-----GCCCACCGCGgC- -5'
6424 5' -67.3 NC_001847.1 + 5442 0.68 0.308439
Target:  5'- -cCCCUGCgUGuUGCCCGacggcGGUGGCgGCCGc -3'
miRNA:   3'- gcGGGACG-GC-ACGGGC-----CCACCG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.