miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 113368 0.79 0.047511
Target:  5'- gCGCCCgGCCG-GCgCCGGGcccGGCGCCGg -3'
miRNA:   3'- -GCGGGaCGGCaCG-GGCCCa--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 64449 0.72 0.1672
Target:  5'- gCGCCCccGCCGccGCCCGcGGcGGCGCgGg -3'
miRNA:   3'- -GCGGGa-CGGCa-CGGGC-CCaCCGCGgC- -5'
6424 5' -67.3 NC_001847.1 + 135021 0.71 0.179451
Target:  5'- gGCCCgcggGCgGgGCCgGGGcgcggGGCGCCGg -3'
miRNA:   3'- gCGGGa---CGgCaCGGgCCCa----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 59211 0.66 0.414913
Target:  5'- cCGUCCgcGCCGUGCgcuugcacgcgucggCCGucGGcgaUGGCGCCGg -3'
miRNA:   3'- -GCGGGa-CGGCACG---------------GGC--CC---ACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 63537 0.75 0.091176
Target:  5'- cCGCgCUGCUGgcgccGCCUGGGccGGCGCCGg -3'
miRNA:   3'- -GCGgGACGGCa----CGGGCCCa-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 19662 0.75 0.105705
Target:  5'- gGCCCgGCCGccggaaacUGCgaCCGGGUGcGCGCCGu -3'
miRNA:   3'- gCGGGaCGGC--------ACG--GGCCCAC-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 88681 0.73 0.125397
Target:  5'- gGCCCUGUacguaaGUGCCCuGGcGGCGCUGc -3'
miRNA:   3'- gCGGGACGg-----CACGGGcCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 103073 0.73 0.13162
Target:  5'- gCGCCCagggGCCcgaGCCCGGG-GGCcGCCGa -3'
miRNA:   3'- -GCGGGa---CGGca-CGGGCCCaCCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 700 0.73 0.138127
Target:  5'- uGCCCUGCCGcaaguuuaUGCUguaucugaugCGcGGUGGUGCCGu -3'
miRNA:   3'- gCGGGACGGC--------ACGG----------GC-CCACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 52516 0.72 0.1672
Target:  5'- gCGCgCgGCCGcgcgGCCCGGGggaUGGuCGCCGg -3'
miRNA:   3'- -GCGgGaCGGCa---CGGGCCC---ACC-GCGGC- -5'
6424 5' -67.3 NC_001847.1 + 33335 0.72 0.148442
Target:  5'- gGCCUcGCg--GCCUGGGUGGCGCUGc -3'
miRNA:   3'- gCGGGaCGgcaCGGGCCCACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 131152 0.73 0.134837
Target:  5'- gCGCCCcgcgggGCCGcgcGCCCGGGcccccGGCGCCc -3'
miRNA:   3'- -GCGGGa-----CGGCa--CGGGCCCa----CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 134177 0.77 0.065943
Target:  5'- aGCCCcGCCG-GCCCGGGUgccGGCGCa- -3'
miRNA:   3'- gCGGGaCGGCaCGGGCCCA---CCGCGgc -5'
6424 5' -67.3 NC_001847.1 + 103903 0.72 0.155704
Target:  5'- aCGCCgggcGCCGcgGCCgCGGGcGGCGCCGc -3'
miRNA:   3'- -GCGGga--CGGCa-CGG-GCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 106050 0.76 0.078556
Target:  5'- cCGCCCgcGCCGUGCucgCCGGcGgcaggGGCGCCGg -3'
miRNA:   3'- -GCGGGa-CGGCACG---GGCC-Ca----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 132715 0.73 0.13162
Target:  5'- gGCCCUGCCGgccGCCgCGGG-GGCcCCu -3'
miRNA:   3'- gCGGGACGGCa--CGG-GCCCaCCGcGGc -5'
6424 5' -67.3 NC_001847.1 + 30894 0.72 0.163286
Target:  5'- uCGCCCgGCCGcaGCCCGGuGaGGCGCgCGc -3'
miRNA:   3'- -GCGGGaCGGCa-CGGGCC-CaCCGCG-GC- -5'
6424 5' -67.3 NC_001847.1 + 76641 0.71 0.175281
Target:  5'- uGCCCgucGCCcUGCCCGaGGgcggggagGGCGCCu -3'
miRNA:   3'- gCGGGa--CGGcACGGGC-CCa-------CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 39832 0.76 0.088947
Target:  5'- gGCCCUGCCGgcgccgcGCCUGGa-GGCGCCa -3'
miRNA:   3'- gCGGGACGGCa------CGGGCCcaCCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 11314 0.74 0.113761
Target:  5'- gCGCCC-GCCGagGCCggCGGGcggcUGGCGCCGg -3'
miRNA:   3'- -GCGGGaCGGCa-CGG--GCCC----ACCGCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.