Results 1 - 20 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 113368 | 0.79 | 0.047511 |
Target: 5'- gCGCCCgGCCG-GCgCCGGGcccGGCGCCGg -3' miRNA: 3'- -GCGGGaCGGCaCG-GGCCCa--CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 64449 | 0.72 | 0.1672 |
Target: 5'- gCGCCCccGCCGccGCCCGcGGcGGCGCgGg -3' miRNA: 3'- -GCGGGa-CGGCa-CGGGC-CCaCCGCGgC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 135021 | 0.71 | 0.179451 |
Target: 5'- gGCCCgcggGCgGgGCCgGGGcgcggGGCGCCGg -3' miRNA: 3'- gCGGGa---CGgCaCGGgCCCa----CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 59211 | 0.66 | 0.414913 |
Target: 5'- cCGUCCgcGCCGUGCgcuugcacgcgucggCCGucGGcgaUGGCGCCGg -3' miRNA: 3'- -GCGGGa-CGGCACG---------------GGC--CC---ACCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 63537 | 0.75 | 0.091176 |
Target: 5'- cCGCgCUGCUGgcgccGCCUGGGccGGCGCCGg -3' miRNA: 3'- -GCGgGACGGCa----CGGGCCCa-CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 19662 | 0.75 | 0.105705 |
Target: 5'- gGCCCgGCCGccggaaacUGCgaCCGGGUGcGCGCCGu -3' miRNA: 3'- gCGGGaCGGC--------ACG--GGCCCAC-CGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 88681 | 0.73 | 0.125397 |
Target: 5'- gGCCCUGUacguaaGUGCCCuGGcGGCGCUGc -3' miRNA: 3'- gCGGGACGg-----CACGGGcCCaCCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 103073 | 0.73 | 0.13162 |
Target: 5'- gCGCCCagggGCCcgaGCCCGGG-GGCcGCCGa -3' miRNA: 3'- -GCGGGa---CGGca-CGGGCCCaCCG-CGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 700 | 0.73 | 0.138127 |
Target: 5'- uGCCCUGCCGcaaguuuaUGCUguaucugaugCGcGGUGGUGCCGu -3' miRNA: 3'- gCGGGACGGC--------ACGG----------GC-CCACCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 52516 | 0.72 | 0.1672 |
Target: 5'- gCGCgCgGCCGcgcgGCCCGGGggaUGGuCGCCGg -3' miRNA: 3'- -GCGgGaCGGCa---CGGGCCC---ACC-GCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 33335 | 0.72 | 0.148442 |
Target: 5'- gGCCUcGCg--GCCUGGGUGGCGCUGc -3' miRNA: 3'- gCGGGaCGgcaCGGGCCCACCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 131152 | 0.73 | 0.134837 |
Target: 5'- gCGCCCcgcgggGCCGcgcGCCCGGGcccccGGCGCCc -3' miRNA: 3'- -GCGGGa-----CGGCa--CGGGCCCa----CCGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 134177 | 0.77 | 0.065943 |
Target: 5'- aGCCCcGCCG-GCCCGGGUgccGGCGCa- -3' miRNA: 3'- gCGGGaCGGCaCGGGCCCA---CCGCGgc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 103903 | 0.72 | 0.155704 |
Target: 5'- aCGCCgggcGCCGcgGCCgCGGGcGGCGCCGc -3' miRNA: 3'- -GCGGga--CGGCa-CGG-GCCCaCCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 106050 | 0.76 | 0.078556 |
Target: 5'- cCGCCCgcGCCGUGCucgCCGGcGgcaggGGCGCCGg -3' miRNA: 3'- -GCGGGa-CGGCACG---GGCC-Ca----CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 132715 | 0.73 | 0.13162 |
Target: 5'- gGCCCUGCCGgccGCCgCGGG-GGCcCCu -3' miRNA: 3'- gCGGGACGGCa--CGG-GCCCaCCGcGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 30894 | 0.72 | 0.163286 |
Target: 5'- uCGCCCgGCCGcaGCCCGGuGaGGCGCgCGc -3' miRNA: 3'- -GCGGGaCGGCa-CGGGCC-CaCCGCG-GC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 76641 | 0.71 | 0.175281 |
Target: 5'- uGCCCgucGCCcUGCCCGaGGgcggggagGGCGCCu -3' miRNA: 3'- gCGGGa--CGGcACGGGC-CCa-------CCGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 39832 | 0.76 | 0.088947 |
Target: 5'- gGCCCUGCCGgcgccgcGCCUGGa-GGCGCCa -3' miRNA: 3'- gCGGGACGGCa------CGGGCCcaCCGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 11314 | 0.74 | 0.113761 |
Target: 5'- gCGCCC-GCCGagGCCggCGGGcggcUGGCGCCGg -3' miRNA: 3'- -GCGGGaCGGCa-CGG--GCCC----ACCGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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