Results 21 - 40 of 269 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 76406 | 0.66 | 0.400418 |
Target: 5'- cCGCCgCUGUCGggccgccggaggaGCCCgGGGUGGcCGCg- -3' miRNA: 3'- -GCGG-GACGGCa------------CGGG-CCCACC-GCGgc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 55892 | 0.66 | 0.395658 |
Target: 5'- gGCCCgacGCCGgcuagcaGCUCGGGgagcGCGCCc -3' miRNA: 3'- gCGGGa--CGGCa------CGGGCCCac--CGCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 126666 | 0.66 | 0.395658 |
Target: 5'- cCGCCCccgGCCGagcgccgccCCCGGcccGGCGCCGc -3' miRNA: 3'- -GCGGGa--CGGCac-------GGGCCca-CCGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 34540 | 0.66 | 0.395658 |
Target: 5'- cCGCCC-GCCGggcGCuuGGGgccacaGGcCGCCa -3' miRNA: 3'- -GCGGGaCGGCa--CGggCCCa-----CC-GCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 4221 | 0.66 | 0.395658 |
Target: 5'- aGCCCUGCgCgGUG-CCGGcgcGCGCCGg -3' miRNA: 3'- gCGGGACG-G-CACgGGCCcacCGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 35492 | 0.66 | 0.395658 |
Target: 5'- gGUCCgGCgCGcguuaUGCUCGGcGUGcGCGCCGg -3' miRNA: 3'- gCGGGaCG-GC-----ACGGGCC-CAC-CGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 23853 | 0.66 | 0.395658 |
Target: 5'- cCGCCCccgGCCGagcgccgccCCCGGcccGGCGCCGc -3' miRNA: 3'- -GCGGGa--CGGCac-------GGGCCca-CCGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 129356 | 0.66 | 0.395658 |
Target: 5'- gCGCggUGCCGgGCCCGGGgcuaGaCGCCGc -3' miRNA: 3'- -GCGggACGGCaCGGGCCCac--C-GCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 121778 | 0.66 | 0.395658 |
Target: 5'- gCGCUCauuUGCCGUGUagCCGGGcgccucUGaGUGCCGu -3' miRNA: 3'- -GCGGG---ACGGCACG--GGCCC------AC-CGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 119504 | 0.66 | 0.395658 |
Target: 5'- aGCCCgaGCCcgaGCCCGGaGgGGCGgCGg -3' miRNA: 3'- gCGGGa-CGGca-CGGGCC-CaCCGCgGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 89590 | 0.66 | 0.395658 |
Target: 5'- aGCCCcGCCugcGUGCgCGGGcucUGGCugGCCa -3' miRNA: 3'- gCGGGaCGG---CACGgGCCC---ACCG--CGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 75108 | 0.66 | 0.394869 |
Target: 5'- gCGCCCcggcgcuUGCCcgagaagGCCCGGGccccgccGGgGCCGg -3' miRNA: 3'- -GCGGG-------ACGGca-----CGGGCCCa------CCgCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 123610 | 0.66 | 0.393292 |
Target: 5'- aGCCCaGCCaaggcggcaaacucgGCCgGGGcGGCGCCc -3' miRNA: 3'- gCGGGaCGGca-------------CGGgCCCaCCGCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 13111 | 0.66 | 0.387808 |
Target: 5'- uGUCgCgGCCGgggcGCgCGGGcGGCGCCGc -3' miRNA: 3'- gCGG-GaCGGCa---CGgGCCCaCCGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 105679 | 0.66 | 0.387808 |
Target: 5'- gCGCCCagGCCGacGCgCGGGccgccGCGCCGc -3' miRNA: 3'- -GCGGGa-CGGCa-CGgGCCCac---CGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 95137 | 0.66 | 0.387808 |
Target: 5'- uCGCCggcGCUGcGCuuGGG-GGUGCCGg -3' miRNA: 3'- -GCGGga-CGGCaCGggCCCaCCGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 47805 | 0.66 | 0.387808 |
Target: 5'- gGCCCUcgGCCGacaCCGGGgacgGGaUGCCGg -3' miRNA: 3'- gCGGGA--CGGCacgGGCCCa---CC-GCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 2866 | 0.66 | 0.387808 |
Target: 5'- gCGCCCagGCCGacGCgCGGGccgccGCGCCGc -3' miRNA: 3'- -GCGGGa-CGGCa-CGgGCCCac---CGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 128019 | 0.66 | 0.387808 |
Target: 5'- uGCUCacggGCCaGgaggaGCCCGGccGUGGCGCCu -3' miRNA: 3'- gCGGGa---CGG-Ca----CGGGCC--CACCGCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 75806 | 0.66 | 0.387808 |
Target: 5'- cCGCCCccgaUGCCG-GgCUGGuacGGCGCCGc -3' miRNA: 3'- -GCGGG----ACGGCaCgGGCCca-CCGCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home