miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 76406 0.66 0.400418
Target:  5'- cCGCCgCUGUCGggccgccggaggaGCCCgGGGUGGcCGCg- -3'
miRNA:   3'- -GCGG-GACGGCa------------CGGG-CCCACC-GCGgc -5'
6424 5' -67.3 NC_001847.1 + 55892 0.66 0.395658
Target:  5'- gGCCCgacGCCGgcuagcaGCUCGGGgagcGCGCCc -3'
miRNA:   3'- gCGGGa--CGGCa------CGGGCCCac--CGCGGc -5'
6424 5' -67.3 NC_001847.1 + 126666 0.66 0.395658
Target:  5'- cCGCCCccgGCCGagcgccgccCCCGGcccGGCGCCGc -3'
miRNA:   3'- -GCGGGa--CGGCac-------GGGCCca-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 34540 0.66 0.395658
Target:  5'- cCGCCC-GCCGggcGCuuGGGgccacaGGcCGCCa -3'
miRNA:   3'- -GCGGGaCGGCa--CGggCCCa-----CC-GCGGc -5'
6424 5' -67.3 NC_001847.1 + 4221 0.66 0.395658
Target:  5'- aGCCCUGCgCgGUG-CCGGcgcGCGCCGg -3'
miRNA:   3'- gCGGGACG-G-CACgGGCCcacCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 35492 0.66 0.395658
Target:  5'- gGUCCgGCgCGcguuaUGCUCGGcGUGcGCGCCGg -3'
miRNA:   3'- gCGGGaCG-GC-----ACGGGCC-CAC-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 23853 0.66 0.395658
Target:  5'- cCGCCCccgGCCGagcgccgccCCCGGcccGGCGCCGc -3'
miRNA:   3'- -GCGGGa--CGGCac-------GGGCCca-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 129356 0.66 0.395658
Target:  5'- gCGCggUGCCGgGCCCGGGgcuaGaCGCCGc -3'
miRNA:   3'- -GCGggACGGCaCGGGCCCac--C-GCGGC- -5'
6424 5' -67.3 NC_001847.1 + 121778 0.66 0.395658
Target:  5'- gCGCUCauuUGCCGUGUagCCGGGcgccucUGaGUGCCGu -3'
miRNA:   3'- -GCGGG---ACGGCACG--GGCCC------AC-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 119504 0.66 0.395658
Target:  5'- aGCCCgaGCCcgaGCCCGGaGgGGCGgCGg -3'
miRNA:   3'- gCGGGa-CGGca-CGGGCC-CaCCGCgGC- -5'
6424 5' -67.3 NC_001847.1 + 89590 0.66 0.395658
Target:  5'- aGCCCcGCCugcGUGCgCGGGcucUGGCugGCCa -3'
miRNA:   3'- gCGGGaCGG---CACGgGCCC---ACCG--CGGc -5'
6424 5' -67.3 NC_001847.1 + 75108 0.66 0.394869
Target:  5'- gCGCCCcggcgcuUGCCcgagaagGCCCGGGccccgccGGgGCCGg -3'
miRNA:   3'- -GCGGG-------ACGGca-----CGGGCCCa------CCgCGGC- -5'
6424 5' -67.3 NC_001847.1 + 123610 0.66 0.393292
Target:  5'- aGCCCaGCCaaggcggcaaacucgGCCgGGGcGGCGCCc -3'
miRNA:   3'- gCGGGaCGGca-------------CGGgCCCaCCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 13111 0.66 0.387808
Target:  5'- uGUCgCgGCCGgggcGCgCGGGcGGCGCCGc -3'
miRNA:   3'- gCGG-GaCGGCa---CGgGCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 105679 0.66 0.387808
Target:  5'- gCGCCCagGCCGacGCgCGGGccgccGCGCCGc -3'
miRNA:   3'- -GCGGGa-CGGCa-CGgGCCCac---CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 95137 0.66 0.387808
Target:  5'- uCGCCggcGCUGcGCuuGGG-GGUGCCGg -3'
miRNA:   3'- -GCGGga-CGGCaCGggCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 47805 0.66 0.387808
Target:  5'- gGCCCUcgGCCGacaCCGGGgacgGGaUGCCGg -3'
miRNA:   3'- gCGGGA--CGGCacgGGCCCa---CC-GCGGC- -5'
6424 5' -67.3 NC_001847.1 + 2866 0.66 0.387808
Target:  5'- gCGCCCagGCCGacGCgCGGGccgccGCGCCGc -3'
miRNA:   3'- -GCGGGa-CGGCa-CGgGCCCac---CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 128019 0.66 0.387808
Target:  5'- uGCUCacggGCCaGgaggaGCCCGGccGUGGCGCCu -3'
miRNA:   3'- gCGGGa---CGG-Ca----CGGGCC--CACCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 75806 0.66 0.387808
Target:  5'- cCGCCCccgaUGCCG-GgCUGGuacGGCGCCGc -3'
miRNA:   3'- -GCGGG----ACGGCaCgGGCCca-CCGCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.