miRNA display CGI


Results 1 - 20 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 76556 1.05 0.000802
Target:  5'- cGAGCCCGCGCGCAAAGCGGCCCGCUUa -3'
miRNA:   3'- -CUCGGGCGCGCGUUUCGCCGGGCGAA- -5'
6425 3' -63.2 NC_001847.1 + 37087 0.85 0.027471
Target:  5'- uGGCCCGCcugaGCGCGgaGAGCGGCCCGCUg -3'
miRNA:   3'- cUCGGGCG----CGCGU--UUCGCCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 60740 0.83 0.036909
Target:  5'- cGGCCCGCGCGCGcgcGGCGGCCgCGCg- -3'
miRNA:   3'- cUCGGGCGCGCGUu--UCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 39389 0.82 0.044503
Target:  5'- cGGCCCGCGcCGCcccccgcgccAGAGCGGCCCGCg- -3'
miRNA:   3'- cUCGGGCGC-GCG----------UUUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 39443 0.82 0.044503
Target:  5'- cGGCCCGCGcCGCcccccgcgccAGAGCGGCCCGCg- -3'
miRNA:   3'- cUCGGGCGC-GCG----------UUUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 5880 0.81 0.053615
Target:  5'- cAGCgCUGCGCGCAGGGCGGCCgCGCc- -3'
miRNA:   3'- cUCG-GGCGCGCGUUUCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 39484 0.81 0.053615
Target:  5'- --cCCCGCGC-CAGAGCGGCCCGCg- -3'
miRNA:   3'- cucGGGCGCGcGUUUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 82700 0.81 0.055056
Target:  5'- cGGGCgCCGCuCGCGAAGCgGGCCCGCUUc -3'
miRNA:   3'- -CUCG-GGCGcGCGUUUCG-CCGGGCGAA- -5'
6425 3' -63.2 NC_001847.1 + 39511 0.79 0.068022
Target:  5'- --cCCCGCGC-CAGAGCGGCCCGCc- -3'
miRNA:   3'- cucGGGCGCGcGUUUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 77100 0.79 0.069836
Target:  5'- cGGCCCGCGCGCGGuAGCGGCggggCUGCUUc -3'
miRNA:   3'- cUCGGGCGCGCGUU-UCGCCG----GGCGAA- -5'
6425 3' -63.2 NC_001847.1 + 8064 0.79 0.069836
Target:  5'- cGGCCCGCGCGCAGagGGgGGCaCCGCc- -3'
miRNA:   3'- cUCGGGCGCGCGUU--UCgCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 31662 0.79 0.073413
Target:  5'- gGAGCCCGCGCGCcccgaggagcuaAGGGCGGCCgugucugCGCUg -3'
miRNA:   3'- -CUCGGGCGCGCG------------UUUCGCCGG-------GCGAa -5'
6425 3' -63.2 NC_001847.1 + 31996 0.78 0.079629
Target:  5'- cGAGCCgcgaggaccuuCGCGCGCc-GGCGGCCCGCg- -3'
miRNA:   3'- -CUCGG-----------GCGCGCGuuUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 132553 0.78 0.079629
Target:  5'- cGGGCUCGCGUGCGGccgcGGCGGCCgCGCa- -3'
miRNA:   3'- -CUCGGGCGCGCGUU----UCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 94238 0.78 0.081739
Target:  5'- -cGCCCGCGCgGCGccgugGAGCGGCUCGCg- -3'
miRNA:   3'- cuCGGGCGCG-CGU-----UUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 61369 0.78 0.083902
Target:  5'- -cGCCC-CGCGCucguAGCGGCCCGCg- -3'
miRNA:   3'- cuCGGGcGCGCGuu--UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 50469 0.78 0.088395
Target:  5'- uGAGCgCCGCGCGaCAgcAAGCGGCgCGCUa -3'
miRNA:   3'- -CUCG-GGCGCGC-GU--UUCGCCGgGCGAa -5'
6425 3' -63.2 NC_001847.1 + 99194 0.78 0.090726
Target:  5'- uGGUCCuCGCGCGAGGCGGCCgCGCg- -3'
miRNA:   3'- cUCGGGcGCGCGUUUCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 18543 0.77 0.095564
Target:  5'- -cGUCCGCGcCGCAGAGCGGCagCGCUg -3'
miRNA:   3'- cuCGGGCGC-GCGUUUCGCCGg-GCGAa -5'
6425 3' -63.2 NC_001847.1 + 46763 0.77 0.098073
Target:  5'- -cGCCCGcCGCGCGGGGcCGGUCCGCc- -3'
miRNA:   3'- cuCGGGC-GCGCGUUUC-GCCGGGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.