Results 1 - 20 of 690 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6425 | 3' | -63.2 | NC_001847.1 | + | 254 | 0.66 | 0.502022 |
Target: 5'- -cGCCCG-GCGCccAGgGGCCCGa-- -3' miRNA: 3'- cuCGGGCgCGCGuuUCgCCGGGCgaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 289 | 0.7 | 0.290323 |
Target: 5'- cGAGCCCGCGCG---GGCGccgucCCCGCg- -3' miRNA: 3'- -CUCGGGCGCGCguuUCGCc----GGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 369 | 0.66 | 0.47397 |
Target: 5'- gGGGCCCGCcccGCGCGccGCGcGCcggaCCGCg- -3' miRNA: 3'- -CUCGGGCG---CGCGUuuCGC-CG----GGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 491 | 0.67 | 0.446726 |
Target: 5'- -uGCCCGCGCcuccGCGccugcuGcCGGCCCGCc- -3' miRNA: 3'- cuCGGGCGCG----CGUuu----C-GCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 611 | 0.67 | 0.43784 |
Target: 5'- -cGCuCCGCagcgGCGC---GCGGCCCGCg- -3' miRNA: 3'- cuCG-GGCG----CGCGuuuCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 748 | 0.71 | 0.270933 |
Target: 5'- cGGGCCCcccuaGgGCGAGGcCGGCCCGCc- -3' miRNA: 3'- -CUCGGGcg---CgCGUUUC-GCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 864 | 0.74 | 0.151386 |
Target: 5'- aGAGCaCCuccaCGCGCGGcGGCGGCCCGCg- -3' miRNA: 3'- -CUCG-GGc---GCGCGUU-UCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 921 | 0.68 | 0.394988 |
Target: 5'- -cGCCCGCcgGCGCcggGAAGCccgaGCCCGCg- -3' miRNA: 3'- cuCGGGCG--CGCG---UUUCGc---CGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 946 | 0.7 | 0.28636 |
Target: 5'- cGGCCCGCGCGCGccGcuccacgcugcgccgGGCgucuaugcgccGGCCCGCa- -3' miRNA: 3'- cUCGGGCGCGCGU--U---------------UCG-----------CCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 1028 | 0.67 | 0.446726 |
Target: 5'- -cGCCCGCgGCGCGccgcagcagcacGAGCGucuCCCGCg- -3' miRNA: 3'- cuCGGGCG-CGCGU------------UUCGCc--GGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 1094 | 0.68 | 0.362719 |
Target: 5'- cGGGCgCCGCGgcCGC-GGGCGGCgCCGCc- -3' miRNA: 3'- -CUCG-GGCGC--GCGuUUCGCCG-GGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 1511 | 0.7 | 0.303845 |
Target: 5'- aGAG-CCGCGCGU-AGGCGGCCUcgGCg- -3' miRNA: 3'- -CUCgGGCGCGCGuUUCGCCGGG--CGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 1551 | 0.72 | 0.224321 |
Target: 5'- aAGCCCGCcCGCccgauAGCGcGCCCGCg- -3' miRNA: 3'- cUCGGGCGcGCGuu---UCGC-CGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 1919 | 0.71 | 0.239241 |
Target: 5'- aGAGCCCGC-CGCGGcgcGGCGGCCacucgggccgccggCGCUc -3' miRNA: 3'- -CUCGGGCGcGCGUU---UCGCCGG--------------GCGAa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 1936 | 0.68 | 0.360374 |
Target: 5'- uAGCCgGCGCGCGGcgcagagcuccuccAGCGagggcaGCCCGCg- -3' miRNA: 3'- cUCGGgCGCGCGUU--------------UCGC------CGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 2096 | 0.77 | 0.105981 |
Target: 5'- gGGGCCCGCGCGgc-GGCGGgCCGCg- -3' miRNA: 3'- -CUCGGGCGCGCguuUCGCCgGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 2149 | 0.66 | 0.518238 |
Target: 5'- cGAGCgCCGgGCGCcagggcucggggaaGAgcgGGUGGUCCGCg- -3' miRNA: 3'- -CUCG-GGCgCGCG--------------UU---UCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 2178 | 0.71 | 0.240949 |
Target: 5'- -cGCCCGCGcCGCcuGGGCGGCgUGCg- -3' miRNA: 3'- cuCGGGCGC-GCGu-UUCGCCGgGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 2381 | 0.66 | 0.524976 |
Target: 5'- -cGCCCGCgaagacggcggugacGCGCucGGCcguGGCUCGCUg -3' miRNA: 3'- cuCGGGCG---------------CGCGuuUCG---CCGGGCGAa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 2608 | 0.67 | 0.420376 |
Target: 5'- cGAGCCCGcCGCGCcGgaggugcuucGGCGGgaCCGCc- -3' miRNA: 3'- -CUCGGGC-GCGCGuU----------UCGCCg-GGCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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