miRNA display CGI


Results 1 - 20 of 690 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 254 0.66 0.502022
Target:  5'- -cGCCCG-GCGCccAGgGGCCCGa-- -3'
miRNA:   3'- cuCGGGCgCGCGuuUCgCCGGGCgaa -5'
6425 3' -63.2 NC_001847.1 + 289 0.7 0.290323
Target:  5'- cGAGCCCGCGCG---GGCGccgucCCCGCg- -3'
miRNA:   3'- -CUCGGGCGCGCguuUCGCc----GGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 369 0.66 0.47397
Target:  5'- gGGGCCCGCcccGCGCGccGCGcGCcggaCCGCg- -3'
miRNA:   3'- -CUCGGGCG---CGCGUuuCGC-CG----GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 491 0.67 0.446726
Target:  5'- -uGCCCGCGCcuccGCGccugcuGcCGGCCCGCc- -3'
miRNA:   3'- cuCGGGCGCG----CGUuu----C-GCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 611 0.67 0.43784
Target:  5'- -cGCuCCGCagcgGCGC---GCGGCCCGCg- -3'
miRNA:   3'- cuCG-GGCG----CGCGuuuCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 748 0.71 0.270933
Target:  5'- cGGGCCCcccuaGgGCGAGGcCGGCCCGCc- -3'
miRNA:   3'- -CUCGGGcg---CgCGUUUC-GCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 864 0.74 0.151386
Target:  5'- aGAGCaCCuccaCGCGCGGcGGCGGCCCGCg- -3'
miRNA:   3'- -CUCG-GGc---GCGCGUU-UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 921 0.68 0.394988
Target:  5'- -cGCCCGCcgGCGCcggGAAGCccgaGCCCGCg- -3'
miRNA:   3'- cuCGGGCG--CGCG---UUUCGc---CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 946 0.7 0.28636
Target:  5'- cGGCCCGCGCGCGccGcuccacgcugcgccgGGCgucuaugcgccGGCCCGCa- -3'
miRNA:   3'- cUCGGGCGCGCGU--U---------------UCG-----------CCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 1028 0.67 0.446726
Target:  5'- -cGCCCGCgGCGCGccgcagcagcacGAGCGucuCCCGCg- -3'
miRNA:   3'- cuCGGGCG-CGCGU------------UUCGCc--GGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 1094 0.68 0.362719
Target:  5'- cGGGCgCCGCGgcCGC-GGGCGGCgCCGCc- -3'
miRNA:   3'- -CUCG-GGCGC--GCGuUUCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 1511 0.7 0.303845
Target:  5'- aGAG-CCGCGCGU-AGGCGGCCUcgGCg- -3'
miRNA:   3'- -CUCgGGCGCGCGuUUCGCCGGG--CGaa -5'
6425 3' -63.2 NC_001847.1 + 1551 0.72 0.224321
Target:  5'- aAGCCCGCcCGCccgauAGCGcGCCCGCg- -3'
miRNA:   3'- cUCGGGCGcGCGuu---UCGC-CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 1919 0.71 0.239241
Target:  5'- aGAGCCCGC-CGCGGcgcGGCGGCCacucgggccgccggCGCUc -3'
miRNA:   3'- -CUCGGGCGcGCGUU---UCGCCGG--------------GCGAa -5'
6425 3' -63.2 NC_001847.1 + 1936 0.68 0.360374
Target:  5'- uAGCCgGCGCGCGGcgcagagcuccuccAGCGagggcaGCCCGCg- -3'
miRNA:   3'- cUCGGgCGCGCGUU--------------UCGC------CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 2096 0.77 0.105981
Target:  5'- gGGGCCCGCGCGgc-GGCGGgCCGCg- -3'
miRNA:   3'- -CUCGGGCGCGCguuUCGCCgGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 2149 0.66 0.518238
Target:  5'- cGAGCgCCGgGCGCcagggcucggggaaGAgcgGGUGGUCCGCg- -3'
miRNA:   3'- -CUCG-GGCgCGCG--------------UU---UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 2178 0.71 0.240949
Target:  5'- -cGCCCGCGcCGCcuGGGCGGCgUGCg- -3'
miRNA:   3'- cuCGGGCGC-GCGu-UUCGCCGgGCGaa -5'
6425 3' -63.2 NC_001847.1 + 2381 0.66 0.524976
Target:  5'- -cGCCCGCgaagacggcggugacGCGCucGGCcguGGCUCGCUg -3'
miRNA:   3'- cuCGGGCG---------------CGCGuuUCG---CCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 2608 0.67 0.420376
Target:  5'- cGAGCCCGcCGCGCcGgaggugcuucGGCGGgaCCGCc- -3'
miRNA:   3'- -CUCGGGC-GCGCGuU----------UCGCCg-GGCGaa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.