miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 5' -47.6 NC_001847.1 + 34062 0.66 0.999718
Target:  5'- cGCGuuuuUCGAGGG-----GCACGCGGAg -3'
miRNA:   3'- -CGUuc--AGCUCCUacaaaUGUGUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 97621 0.66 0.999642
Target:  5'- uGCAccGUCGAGGGUGcgUcCAgGCGGc -3'
miRNA:   3'- -CGUu-CAGCUCCUACaaAuGUgUGCCu -5'
6425 5' -47.6 NC_001847.1 + 49193 0.66 0.999549
Target:  5'- uGCAAG-CGGGGAcGgcaACGCgACGGGg -3'
miRNA:   3'- -CGUUCaGCUCCUaCaaaUGUG-UGCCU- -5'
6425 5' -47.6 NC_001847.1 + 29832 0.66 0.999435
Target:  5'- cGCAGGUCcgcaacgcgGAGGcUGUgcugggcgagcUGCACACGGu -3'
miRNA:   3'- -CGUUCAG---------CUCCuACAa----------AUGUGUGCCu -5'
6425 5' -47.6 NC_001847.1 + 134845 0.66 0.999435
Target:  5'- gGCGGGgcgCGGGGAcGgcgccCGCGCGGGc -3'
miRNA:   3'- -CGUUCa--GCUCCUaCaaau-GUGUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 36013 0.66 0.999435
Target:  5'- cGCGGG-CGuGGugcuggGgcUGCGCGCGGAc -3'
miRNA:   3'- -CGUUCaGCuCCua----CaaAUGUGUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 32032 0.66 0.999435
Target:  5'- gGCGGGgcgCGGGGAcGgcgccCGCGCGGGc -3'
miRNA:   3'- -CGUUCa--GCUCCUaCaaau-GUGUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 85852 0.67 0.999133
Target:  5'- aGCGcGUCGcuggcgcGGAUGUUaUACGgCGCGGAc -3'
miRNA:   3'- -CGUuCAGCu------CCUACAA-AUGU-GUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 70 0.67 0.998935
Target:  5'- gGCGGGggCGGGGugggGgaUGgGCGCGGAg -3'
miRNA:   3'- -CGUUCa-GCUCCua--CaaAUgUGUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 43560 0.67 0.9987
Target:  5'- cGCGAGcgccgCGAGGAUGgccgaggcgUACG-ACGGAc -3'
miRNA:   3'- -CGUUCa----GCUCCUACaa-------AUGUgUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 74122 0.68 0.998096
Target:  5'- cGCGcc-CGGGGAUGUg-ACGCGCGGc -3'
miRNA:   3'- -CGUucaGCUCCUACAaaUGUGUGCCu -5'
6425 5' -47.6 NC_001847.1 + 57913 0.68 0.997716
Target:  5'- gGCGAGgaaGAGGAggagUUugACGCGGc -3'
miRNA:   3'- -CGUUCag-CUCCUaca-AAugUGUGCCu -5'
6425 5' -47.6 NC_001847.1 + 48811 0.68 0.997225
Target:  5'- gGCGccaUCGGGGAUGUccgggccUUGcCGCGCGGGg -3'
miRNA:   3'- -CGUuc-AGCUCCUACA-------AAU-GUGUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 100528 0.68 0.996173
Target:  5'- uGCGGGUCGcGGAgUGggUGgGCGgGGAg -3'
miRNA:   3'- -CGUUCAGCuCCU-ACaaAUgUGUgCCU- -5'
6425 5' -47.6 NC_001847.1 + 3562 0.69 0.994733
Target:  5'- gGCGuAGUUGAGGGUGUagcCGC-CGGGg -3'
miRNA:   3'- -CGU-UCAGCUCCUACAaauGUGuGCCU- -5'
6425 5' -47.6 NC_001847.1 + 33555 0.7 0.990546
Target:  5'- -uGAGUCGAGGc-----GCACGCGGGg -3'
miRNA:   3'- cgUUCAGCUCCuacaaaUGUGUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 46446 0.7 0.990546
Target:  5'- cGCGgcGGU-GGGGAUGc--GCGCGCGGAu -3'
miRNA:   3'- -CGU--UCAgCUCCUACaaaUGUGUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 85794 0.71 0.984103
Target:  5'- uGCGcGUCGAGGGUGcggGCGCgugcagcgACGGGg -3'
miRNA:   3'- -CGUuCAGCUCCUACaaaUGUG--------UGCCU- -5'
6425 5' -47.6 NC_001847.1 + 109353 0.71 0.984103
Target:  5'- aGCAGcUCGAGGccGa--GCACGCGGAa -3'
miRNA:   3'- -CGUUcAGCUCCuaCaaaUGUGUGCCU- -5'
6425 5' -47.6 NC_001847.1 + 11624 0.71 0.97741
Target:  5'- gGUGAGcUCGAGGAUGgggauggACACgAUGGAg -3'
miRNA:   3'- -CGUUC-AGCUCCUACaaa----UGUG-UGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.