Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6425 | 5' | -47.6 | NC_001847.1 | + | 34062 | 0.66 | 0.999718 |
Target: 5'- cGCGuuuuUCGAGGG-----GCACGCGGAg -3' miRNA: 3'- -CGUuc--AGCUCCUacaaaUGUGUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 97621 | 0.66 | 0.999642 |
Target: 5'- uGCAccGUCGAGGGUGcgUcCAgGCGGc -3' miRNA: 3'- -CGUu-CAGCUCCUACaaAuGUgUGCCu -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 49193 | 0.66 | 0.999549 |
Target: 5'- uGCAAG-CGGGGAcGgcaACGCgACGGGg -3' miRNA: 3'- -CGUUCaGCUCCUaCaaaUGUG-UGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 29832 | 0.66 | 0.999435 |
Target: 5'- cGCAGGUCcgcaacgcgGAGGcUGUgcugggcgagcUGCACACGGu -3' miRNA: 3'- -CGUUCAG---------CUCCuACAa----------AUGUGUGCCu -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 134845 | 0.66 | 0.999435 |
Target: 5'- gGCGGGgcgCGGGGAcGgcgccCGCGCGGGc -3' miRNA: 3'- -CGUUCa--GCUCCUaCaaau-GUGUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 36013 | 0.66 | 0.999435 |
Target: 5'- cGCGGG-CGuGGugcuggGgcUGCGCGCGGAc -3' miRNA: 3'- -CGUUCaGCuCCua----CaaAUGUGUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 32032 | 0.66 | 0.999435 |
Target: 5'- gGCGGGgcgCGGGGAcGgcgccCGCGCGGGc -3' miRNA: 3'- -CGUUCa--GCUCCUaCaaau-GUGUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 85852 | 0.67 | 0.999133 |
Target: 5'- aGCGcGUCGcuggcgcGGAUGUUaUACGgCGCGGAc -3' miRNA: 3'- -CGUuCAGCu------CCUACAA-AUGU-GUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 70 | 0.67 | 0.998935 |
Target: 5'- gGCGGGggCGGGGugggGgaUGgGCGCGGAg -3' miRNA: 3'- -CGUUCa-GCUCCua--CaaAUgUGUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 43560 | 0.67 | 0.9987 |
Target: 5'- cGCGAGcgccgCGAGGAUGgccgaggcgUACG-ACGGAc -3' miRNA: 3'- -CGUUCa----GCUCCUACaa-------AUGUgUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 74122 | 0.68 | 0.998096 |
Target: 5'- cGCGcc-CGGGGAUGUg-ACGCGCGGc -3' miRNA: 3'- -CGUucaGCUCCUACAaaUGUGUGCCu -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 57913 | 0.68 | 0.997716 |
Target: 5'- gGCGAGgaaGAGGAggagUUugACGCGGc -3' miRNA: 3'- -CGUUCag-CUCCUaca-AAugUGUGCCu -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 48811 | 0.68 | 0.997225 |
Target: 5'- gGCGccaUCGGGGAUGUccgggccUUGcCGCGCGGGg -3' miRNA: 3'- -CGUuc-AGCUCCUACA-------AAU-GUGUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 100528 | 0.68 | 0.996173 |
Target: 5'- uGCGGGUCGcGGAgUGggUGgGCGgGGAg -3' miRNA: 3'- -CGUUCAGCuCCU-ACaaAUgUGUgCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 3562 | 0.69 | 0.994733 |
Target: 5'- gGCGuAGUUGAGGGUGUagcCGC-CGGGg -3' miRNA: 3'- -CGU-UCAGCUCCUACAaauGUGuGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 33555 | 0.7 | 0.990546 |
Target: 5'- -uGAGUCGAGGc-----GCACGCGGGg -3' miRNA: 3'- cgUUCAGCUCCuacaaaUGUGUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 46446 | 0.7 | 0.990546 |
Target: 5'- cGCGgcGGU-GGGGAUGc--GCGCGCGGAu -3' miRNA: 3'- -CGU--UCAgCUCCUACaaaUGUGUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 85794 | 0.71 | 0.984103 |
Target: 5'- uGCGcGUCGAGGGUGcggGCGCgugcagcgACGGGg -3' miRNA: 3'- -CGUuCAGCUCCUACaaaUGUG--------UGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 109353 | 0.71 | 0.984103 |
Target: 5'- aGCAGcUCGAGGccGa--GCACGCGGAa -3' miRNA: 3'- -CGUUcAGCUCCuaCaaaUGUGUGCCU- -5' |
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6425 | 5' | -47.6 | NC_001847.1 | + | 11624 | 0.71 | 0.97741 |
Target: 5'- gGUGAGcUCGAGGAUGgggauggACACgAUGGAg -3' miRNA: 3'- -CGUUC-AGCUCCUACaaa----UGUG-UGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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