miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 3' -57.1 NC_001847.1 + 70041 0.66 0.846417
Target:  5'- gCGCUCg--CUGAGCgcgGCCUucucgaucgCCGCCGa -3'
miRNA:   3'- -GCGAGaaaGGUUCGag-CGGA---------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 44355 0.66 0.846417
Target:  5'- uCGCUCUcgcUCCc-GCUCGCCguuugCGCCu -3'
miRNA:   3'- -GCGAGAa--AGGuuCGAGCGGag---GCGGc -5'
6426 3' -57.1 NC_001847.1 + 133652 0.66 0.846417
Target:  5'- gGCUCUaccCCGAGg-CGCCgCCGCUGc -3'
miRNA:   3'- gCGAGAaa-GGUUCgaGCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 107425 0.66 0.846417
Target:  5'- aGCUCgg-CC-AGCUCGgCgcgggcggcCCGCCGg -3'
miRNA:   3'- gCGAGaaaGGuUCGAGCgGa--------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 30839 0.66 0.846417
Target:  5'- gGCUCUaccCCGAGg-CGCCgCCGCUGc -3'
miRNA:   3'- gCGAGAaa-GGUUCgaGCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 67369 0.66 0.846417
Target:  5'- gGCUC--UCCGuAGCUCGuCCgcgCUGCCc -3'
miRNA:   3'- gCGAGaaAGGU-UCGAGC-GGa--GGCGGc -5'
6426 3' -57.1 NC_001847.1 + 4612 0.66 0.846417
Target:  5'- aGCUCgg-CC-AGCUCGgCgcgggcggcCCGCCGg -3'
miRNA:   3'- gCGAGaaaGGuUCGAGCgGa--------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 59583 0.66 0.838314
Target:  5'- aGCUCUggCU-GGCgugCGCgUCCGCCc -3'
miRNA:   3'- gCGAGAaaGGuUCGa--GCGgAGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 68933 0.66 0.838314
Target:  5'- gCGCggcggCCGcgGGCUgCGCCUCCaGCCa -3'
miRNA:   3'- -GCGagaaaGGU--UCGA-GCGGAGG-CGGc -5'
6426 3' -57.1 NC_001847.1 + 40907 0.66 0.838314
Target:  5'- cCGCUCcacggcCCGcGCgggCGCC-CCGCCGc -3'
miRNA:   3'- -GCGAGaaa---GGUuCGa--GCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 128620 0.66 0.838314
Target:  5'- gCGCUUcuacgugUUCCAGGCUgagcgCGCCggcgaCGCCGc -3'
miRNA:   3'- -GCGAGa------AAGGUUCGA-----GCGGag---GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 103426 0.66 0.838314
Target:  5'- gGCUCgucgUCCAGGUaugucUCGC-UCgCGCCGu -3'
miRNA:   3'- gCGAGaa--AGGUUCG-----AGCGgAG-GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 118283 0.66 0.838314
Target:  5'- --gUCUcUCCAGgagcccGCUCGCCUCgagCGCCGc -3'
miRNA:   3'- gcgAGAaAGGUU------CGAGCGGAG---GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 66164 0.66 0.838314
Target:  5'- cCGCUgUcucCCGGGCUggCGCCggCCGCCc -3'
miRNA:   3'- -GCGAgAaa-GGUUCGA--GCGGa-GGCGGc -5'
6426 3' -57.1 NC_001847.1 + 3188 0.66 0.830024
Target:  5'- cCGCUCUcgCCGccgucGC-CGCCaUCGCCGg -3'
miRNA:   3'- -GCGAGAaaGGUu----CGaGCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 106115 0.66 0.830024
Target:  5'- aGCUCgg--CGAGCgcggcgcgggCGCCgcugCCGCCGg -3'
miRNA:   3'- gCGAGaaagGUUCGa---------GCGGa---GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 103824 0.66 0.830024
Target:  5'- gCGCUCca-CCAGGC-CGCCgcCCGCgGc -3'
miRNA:   3'- -GCGAGaaaGGUUCGaGCGGa-GGCGgC- -5'
6426 3' -57.1 NC_001847.1 + 54447 0.66 0.830024
Target:  5'- uGCUUcUUCC-AGCcgcaGCCgCCGCCGg -3'
miRNA:   3'- gCGAGaAAGGuUCGag--CGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 1011 0.66 0.830024
Target:  5'- gCGCUCca-CCAGGC-CGCCgcCCGCgGc -3'
miRNA:   3'- -GCGAGaaaGGUUCGaGCGGa-GGCGgC- -5'
6426 3' -57.1 NC_001847.1 + 3302 0.66 0.830024
Target:  5'- aGCUCgg--CGAGCgcggcgcgggCGCCgcugCCGCCGg -3'
miRNA:   3'- gCGAGaaagGUUCGa---------GCGGa---GGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.