Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6426 | 5' | -58.4 | NC_001847.1 | + | 134388 | 0.66 | 0.738635 |
Target: 5'- gGCGGCGGGccggccucgcccuAGGgGGGCCcGCgggaaggGAGGg -3' miRNA: 3'- aCGUCGUCC-------------UCCaCUCGGuCGa------CUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 13869 | 0.66 | 0.734711 |
Target: 5'- gGUGGCgAGGGGGggcgccuuuggccggGAGCCcagugccacgacgguGGCUGGGGc -3' miRNA: 3'- aCGUCG-UCCUCCa--------------CUCGG---------------UCGACUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 33880 | 0.66 | 0.730771 |
Target: 5'- gGCAGUgAGGAGGgacgaggggagcgccGGGCCAGgCUGcucGGGg -3' miRNA: 3'- aCGUCG-UCCUCCa--------------CUCGGUC-GAC---UCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 59559 | 0.66 | 0.729784 |
Target: 5'- gGCGGCGGGGGcG-GuGCCGGCgGAa- -3' miRNA: 3'- aCGUCGUCCUC-CaCuCGGUCGaCUcc -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 45405 | 0.66 | 0.728797 |
Target: 5'- cGguGCcuAGGAGGUGGGaaaaguaguagucUguGUUGAGGg -3' miRNA: 3'- aCguCG--UCCUCCACUC-------------GguCGACUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 52021 | 0.66 | 0.726818 |
Target: 5'- gGCGGCcgccgAGGAGGUGcuacgcgaggcggaGGCCcGCccgGAGGu -3' miRNA: 3'- aCGUCG-----UCCUCCAC--------------UCGGuCGa--CUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 29511 | 0.67 | 0.709879 |
Target: 5'- cGcCGGC-GGAGGUGccGGCgCGGCUGGcGGc -3' miRNA: 3'- aC-GUCGuCCUCCAC--UCG-GUCGACU-CC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 132324 | 0.67 | 0.709879 |
Target: 5'- cGcCGGC-GGAGGUGccGGCgCGGCUGGcGGc -3' miRNA: 3'- aC-GUCGuCCUCCAC--UCG-GUCGACU-CC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 125326 | 0.67 | 0.699822 |
Target: 5'- gGCGGCGGcGGGccGGGCCGGuCUGccGGGa -3' miRNA: 3'- aCGUCGUCcUCCa-CUCGGUC-GAC--UCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 22513 | 0.67 | 0.699822 |
Target: 5'- gGCGGCGGcGGGccGGGCCGGuCUGccGGGa -3' miRNA: 3'- aCGUCGUCcUCCa-CUCGGUC-GAC--UCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 31707 | 0.67 | 0.699822 |
Target: 5'- gGCGGgGGGAGGcgcGGGCCGcgcgccGCUGcGGa -3' miRNA: 3'- aCGUCgUCCUCCa--CUCGGU------CGACuCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 134520 | 0.67 | 0.699822 |
Target: 5'- gGCGGgGGGAGGcgcGGGCCGcgcgccGCUGcGGa -3' miRNA: 3'- aCGUCgUCCUCCa--CUCGGU------CGACuCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 2741 | 0.67 | 0.689708 |
Target: 5'- aGC-GCAGGGcGG-GAGCgAGC-GAGGg -3' miRNA: 3'- aCGuCGUCCU-CCaCUCGgUCGaCUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 27127 | 0.67 | 0.689708 |
Target: 5'- cGCcGCGGcGAGa-GAGCCGGC-GAGGg -3' miRNA: 3'- aCGuCGUC-CUCcaCUCGGUCGaCUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 129940 | 0.67 | 0.689708 |
Target: 5'- cGCcGCGGcGAGa-GAGCCGGC-GAGGg -3' miRNA: 3'- aCGuCGUC-CUCcaCUCGGUCGaCUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 26906 | 0.67 | 0.679546 |
Target: 5'- cGCAGgGGGAGcgagcgagaaaaGgaaGAGCCAGC-GGGGa -3' miRNA: 3'- aCGUCgUCCUC------------Ca--CUCGGUCGaCUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 29057 | 0.67 | 0.679546 |
Target: 5'- gUGCuGCAGGcGGUGGGCUgcguGGCgGuGGc -3' miRNA: 3'- -ACGuCGUCCuCCACUCGG----UCGaCuCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 68999 | 0.67 | 0.669344 |
Target: 5'- aGCGGCucggacgacgAGGAGGaUGAGCU-GCUGcGGu -3' miRNA: 3'- aCGUCG----------UCCUCC-ACUCGGuCGACuCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 6043 | 0.67 | 0.668322 |
Target: 5'- gGCGGgAGGAccccggcGGUGAGCaAGCaggGAGGc -3' miRNA: 3'- aCGUCgUCCU-------CCACUCGgUCGa--CUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 108856 | 0.67 | 0.668322 |
Target: 5'- gGCGGgAGGAccccggcGGUGAGCaAGCaggGAGGc -3' miRNA: 3'- aCGUCgUCCU-------CCACUCGgUCGa--CUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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