miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6429 3' -56 NC_001847.1 + 60085 0.66 0.888486
Target:  5'- -gUGaUGGCCguguUCGUGG-GCAGccUCCCg -3'
miRNA:   3'- aaACaGCCGG----AGCACCuCGUCu-AGGG- -5'
6429 3' -56 NC_001847.1 + 107088 0.66 0.888486
Target:  5'- ---uUCGGCCUUGaGGGGCGccgCCCc -3'
miRNA:   3'- aaacAGCCGGAGCaCCUCGUcuaGGG- -5'
6429 3' -56 NC_001847.1 + 111428 0.66 0.888486
Target:  5'- ---cUCGGCCgggggCGgggGGAGgAGcgCCCu -3'
miRNA:   3'- aaacAGCCGGa----GCa--CCUCgUCuaGGG- -5'
6429 3' -56 NC_001847.1 + 76388 0.66 0.888486
Target:  5'- ----aCGGCCUCG-GGGGgGGcgCCg -3'
miRNA:   3'- aaacaGCCGGAGCaCCUCgUCuaGGg -5'
6429 3' -56 NC_001847.1 + 8615 0.66 0.888486
Target:  5'- ---cUCGGCCgggggCGgggGGAGgAGcgCCCu -3'
miRNA:   3'- aaacAGCCGGa----GCa--CCUCgUCuaGGG- -5'
6429 3' -56 NC_001847.1 + 4275 0.66 0.888486
Target:  5'- ---uUCGGCCUUGaGGGGCGccgCCCc -3'
miRNA:   3'- aaacAGCCGGAGCaCCUCGUcuaGGG- -5'
6429 3' -56 NC_001847.1 + 112860 0.66 0.888486
Target:  5'- -gUGUCGGCCUCGgcGGcGCug--CCUa -3'
miRNA:   3'- aaACAGCCGGAGCa-CCuCGucuaGGG- -5'
6429 3' -56 NC_001847.1 + 99028 0.66 0.881467
Target:  5'- --cG-CGGCUUCGUGGAa-GGcgCCCa -3'
miRNA:   3'- aaaCaGCCGGAGCACCUcgUCuaGGG- -5'
6429 3' -56 NC_001847.1 + 10707 0.66 0.881467
Target:  5'- --cGcCGGCCUCGgaGGAGgGccUCCCg -3'
miRNA:   3'- aaaCaGCCGGAGCa-CCUCgUcuAGGG- -5'
6429 3' -56 NC_001847.1 + 74291 0.66 0.874219
Target:  5'- --cGcUGGCCUCGgcgGGcGCGGAgcugcuguuUCCCa -3'
miRNA:   3'- aaaCaGCCGGAGCa--CCuCGUCU---------AGGG- -5'
6429 3' -56 NC_001847.1 + 51527 0.66 0.874219
Target:  5'- --cGcCGGCaggCG-GGGGCGGcgCCCa -3'
miRNA:   3'- aaaCaGCCGga-GCaCCUCGUCuaGGG- -5'
6429 3' -56 NC_001847.1 + 118457 0.66 0.866749
Target:  5'- -gUGgCGGCCUCGUGccuGCGGcgcaaggCCCg -3'
miRNA:   3'- aaACaGCCGGAGCACcu-CGUCua-----GGG- -5'
6429 3' -56 NC_001847.1 + 99777 0.66 0.866749
Target:  5'- --cG-CGGCUUUGggcggGGGGCAGcgCCUg -3'
miRNA:   3'- aaaCaGCCGGAGCa----CCUCGUCuaGGG- -5'
6429 3' -56 NC_001847.1 + 44760 0.66 0.866749
Target:  5'- --cGUaCGGCCgggggcCGUGGuccgcguccAGCAGGUCgCCg -3'
miRNA:   3'- aaaCA-GCCGGa-----GCACC---------UCGUCUAG-GG- -5'
6429 3' -56 NC_001847.1 + 15389 0.67 0.84306
Target:  5'- --gGUCGGCgUCGgggcUGGGGcCGGGUUUCg -3'
miRNA:   3'- aaaCAGCCGgAGC----ACCUC-GUCUAGGG- -5'
6429 3' -56 NC_001847.1 + 13726 0.67 0.825411
Target:  5'- -aUGacagCGGCCUuccugggCGUGGGGCuGAUCgCg -3'
miRNA:   3'- aaACa---GCCGGA-------GCACCUCGuCUAGgG- -5'
6429 3' -56 NC_001847.1 + 40702 0.67 0.808754
Target:  5'- --aGUCGGUCUgCGUGG-GC-GAaCCCa -3'
miRNA:   3'- aaaCAGCCGGA-GCACCuCGuCUaGGG- -5'
6429 3' -56 NC_001847.1 + 31936 0.67 0.808754
Target:  5'- ----cCGGUCUCGgucGGAGCGcGGUCCg -3'
miRNA:   3'- aaacaGCCGGAGCa--CCUCGU-CUAGGg -5'
6429 3' -56 NC_001847.1 + 98832 0.68 0.803367
Target:  5'- --aGUaGGCUUCGUagaGGcgcauccgcagcaccAGCAGAUCCCg -3'
miRNA:   3'- aaaCAgCCGGAGCA---CC---------------UCGUCUAGGG- -5'
6429 3' -56 NC_001847.1 + 57930 0.68 0.799744
Target:  5'- gUUUGacgCGGCCaaacUGGAGCAGG-CCCg -3'
miRNA:   3'- -AAACa--GCCGGagc-ACCUCGUCUaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.