miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6429 5' -63.4 NC_001847.1 + 103688 0.66 0.525837
Target:  5'- -cGACGCCCaUGGCgCCcacgaucaccaGCGCCAgCGAc -3'
miRNA:   3'- acCUGCGGG-ACCG-GG-----------CGCGGUaGCUa -5'
6429 5' -63.4 NC_001847.1 + 29568 0.66 0.525837
Target:  5'- cGGACGCCgU-GCCgGCuGCCGUCu-- -3'
miRNA:   3'- aCCUGCGGgAcCGGgCG-CGGUAGcua -5'
6429 5' -63.4 NC_001847.1 + 133616 0.66 0.516334
Target:  5'- cGGGCGCCUUcGCgCGCGCCGa---- -3'
miRNA:   3'- aCCUGCGGGAcCGgGCGCGGUagcua -5'
6429 5' -63.4 NC_001847.1 + 19673 0.66 0.516334
Target:  5'- cGGAaacUGCgaCCgGGUgCGCGCCGUCGGUu -3'
miRNA:   3'- aCCU---GCG--GGaCCGgGCGCGGUAGCUA- -5'
6429 5' -63.4 NC_001847.1 + 134526 0.66 0.516334
Target:  5'- gGGAgGCgCgGGCCgCGCGCCGcugCGGa -3'
miRNA:   3'- aCCUgCGgGaCCGG-GCGCGGUa--GCUa -5'
6429 5' -63.4 NC_001847.1 + 75019 0.66 0.516334
Target:  5'- gGGGgGCCagcgGGCagaagGCGCCGUCGGUg -3'
miRNA:   3'- aCCUgCGGga--CCGgg---CGCGGUAGCUA- -5'
6429 5' -63.4 NC_001847.1 + 24073 0.66 0.516334
Target:  5'- cGG--GCCCaGGCCCGCGgCAgCGAg -3'
miRNA:   3'- aCCugCGGGaCCGGGCGCgGUaGCUa -5'
6429 5' -63.4 NC_001847.1 + 31713 0.66 0.516334
Target:  5'- gGGAgGCgCgGGCCgCGCGCCGcugCGGa -3'
miRNA:   3'- aCCUgCGgGaCCGG-GCGCGGUa--GCUa -5'
6429 5' -63.4 NC_001847.1 + 116767 0.66 0.516334
Target:  5'- cGGG-GCCUgcugGGUCUGCGCCGaCGAa -3'
miRNA:   3'- aCCUgCGGGa---CCGGGCGCGGUaGCUa -5'
6429 5' -63.4 NC_001847.1 + 99299 0.66 0.516334
Target:  5'- aGGugGCgCCUcaGCUCGCGCagcgCGUCGAUg -3'
miRNA:   3'- aCCugCG-GGAc-CGGGCGCG----GUAGCUA- -5'
6429 5' -63.4 NC_001847.1 + 30803 0.66 0.516334
Target:  5'- cGGGCGCCUUcGCgCGCGCCGa---- -3'
miRNA:   3'- aCCUGCGGGAcCGgGCGCGGUagcua -5'
6429 5' -63.4 NC_001847.1 + 94681 0.66 0.516334
Target:  5'- aGGACGCUUauGCCCGUGCCG-CGc- -3'
miRNA:   3'- aCCUGCGGGacCGGGCGCGGUaGCua -5'
6429 5' -63.4 NC_001847.1 + 70280 0.66 0.513496
Target:  5'- aGGACGCgcgCCUGGCggggucgcggcgcgCCGCGCUGgucUCGGa -3'
miRNA:   3'- aCCUGCG---GGACCG--------------GGCGCGGU---AGCUa -5'
6429 5' -63.4 NC_001847.1 + 130222 0.66 0.5069
Target:  5'- gGGGCGCUgUugccGCCgGCGCgGUCGGUg -3'
miRNA:   3'- aCCUGCGGgAc---CGGgCGCGgUAGCUA- -5'
6429 5' -63.4 NC_001847.1 + 27409 0.66 0.5069
Target:  5'- gGGGCGCUgUugccGCCgGCGCgGUCGGUg -3'
miRNA:   3'- aCCUGCGGgAc---CGGgCGCGgUAGCUA- -5'
6429 5' -63.4 NC_001847.1 + 87278 0.66 0.5069
Target:  5'- cGGACGUgcgcgCCgacGGCCCGCGgCcgCGGc -3'
miRNA:   3'- aCCUGCG-----GGa--CCGGGCGCgGuaGCUa -5'
6429 5' -63.4 NC_001847.1 + 38125 0.66 0.5069
Target:  5'- aGGACGCgCUgccccccgcGGCCaGCGCCGcCGAc -3'
miRNA:   3'- aCCUGCGgGA---------CCGGgCGCGGUaGCUa -5'
6429 5' -63.4 NC_001847.1 + 33158 0.66 0.5069
Target:  5'- aGGGCGCUCUGGUgggcagcuuugCCGUgacgGCCcgCGAg -3'
miRNA:   3'- aCCUGCGGGACCG-----------GGCG----CGGuaGCUa -5'
6429 5' -63.4 NC_001847.1 + 131421 0.66 0.497541
Target:  5'- gUGcGCGCCgUGGCCgGCGCgCG-CGAUu -3'
miRNA:   3'- -ACcUGCGGgACCGGgCGCG-GUaGCUA- -5'
6429 5' -63.4 NC_001847.1 + 61800 0.66 0.497541
Target:  5'- cGGGuCGCCCUGGCCaugGUcgaacaugagGUCGUCGGc -3'
miRNA:   3'- aCCU-GCGGGACCGGg--CG----------CGGUAGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.