miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6437 3' -54.2 NC_001847.1 + 111073 0.66 0.945136
Target:  5'- cGCuGCCGcGGGCCugGgcccgGCuGCgCGAGAAg -3'
miRNA:   3'- -CG-CGGUuUCUGGugCa----UG-CG-GCUCUU- -5'
6437 3' -54.2 NC_001847.1 + 56892 0.66 0.945136
Target:  5'- cCGCCGgcGACgGCG-ACGCCGGcGGg -3'
miRNA:   3'- cGCGGUuuCUGgUGCaUGCGGCU-CUu -5'
6437 3' -54.2 NC_001847.1 + 6884 0.66 0.945136
Target:  5'- uUGCCGAGGAgCA-GUGCGUCGGcGAGc -3'
miRNA:   3'- cGCGGUUUCUgGUgCAUGCGGCU-CUU- -5'
6437 3' -54.2 NC_001847.1 + 89854 0.66 0.945136
Target:  5'- uUGCCGu-GugCACGUACGUCaAGGAu -3'
miRNA:   3'- cGCGGUuuCugGUGCAUGCGGcUCUU- -5'
6437 3' -54.2 NC_001847.1 + 15866 0.66 0.945136
Target:  5'- uCGCCGAAGACgGCagcuccgacaGCGCCGAcGAGc -3'
miRNA:   3'- cGCGGUUUCUGgUGca--------UGCGGCU-CUU- -5'
6437 3' -54.2 NC_001847.1 + 15021 0.66 0.945136
Target:  5'- gGgGCCGcgcGAG-CCGCGgcCGCCGGGc- -3'
miRNA:   3'- -CgCGGU---UUCuGGUGCauGCGGCUCuu -5'
6437 3' -54.2 NC_001847.1 + 27497 0.66 0.945136
Target:  5'- gGCGgCAGAGGCCucggccgccgccGCGgcgGCGgCGGGGAc -3'
miRNA:   3'- -CGCgGUUUCUGG------------UGCa--UGCgGCUCUU- -5'
6437 3' -54.2 NC_001847.1 + 28093 0.66 0.945136
Target:  5'- gGCGCCugcccGGGGCCGCGcgcgacacCGCCGAu-- -3'
miRNA:   3'- -CGCGGu----UUCUGGUGCau------GCGGCUcuu -5'
6437 3' -54.2 NC_001847.1 + 51831 0.66 0.945136
Target:  5'- gGCGCCAAGcGCCccCGUGCGCgGGu-- -3'
miRNA:   3'- -CGCGGUUUcUGGu-GCAUGCGgCUcuu -5'
6437 3' -54.2 NC_001847.1 + 55011 0.66 0.945136
Target:  5'- gGCGCUGGAGuCCAUGcgcGCGUCGGGc- -3'
miRNA:   3'- -CGCGGUUUCuGGUGCa--UGCGGCUCuu -5'
6437 3' -54.2 NC_001847.1 + 99482 0.66 0.945136
Target:  5'- uGCGUCAc-GACguCGgcCGCCGAGGc -3'
miRNA:   3'- -CGCGGUuuCUGguGCauGCGGCUCUu -5'
6437 3' -54.2 NC_001847.1 + 86447 0.66 0.945136
Target:  5'- cGCGCCGcgcuGCCugG-ACGCCGAc-- -3'
miRNA:   3'- -CGCGGUuuc-UGGugCaUGCGGCUcuu -5'
6437 3' -54.2 NC_001847.1 + 124410 0.66 0.945136
Target:  5'- uGCGCCuguacgccGGCCACaUACuCCGGGAGg -3'
miRNA:   3'- -CGCGGuuu-----CUGGUGcAUGcGGCUCUU- -5'
6437 3' -54.2 NC_001847.1 + 2355 0.66 0.945136
Target:  5'- cGCGCCGGcccGGCCGCGUcgGCGgCGGc-- -3'
miRNA:   3'- -CGCGGUUu--CUGGUGCA--UGCgGCUcuu -5'
6437 3' -54.2 NC_001847.1 + 4939 0.66 0.945136
Target:  5'- aGCGCCcccccGAGcaaccucgcuAUCGCGcGCGCCGGGGGg -3'
miRNA:   3'- -CGCGGu----UUC----------UGGUGCaUGCGGCUCUU- -5'
6437 3' -54.2 NC_001847.1 + 34316 0.66 0.945136
Target:  5'- -gGCCGGAG-CCGCccGgGCCGAGGu -3'
miRNA:   3'- cgCGGUUUCuGGUGcaUgCGGCUCUu -5'
6437 3' -54.2 NC_001847.1 + 59774 0.66 0.945136
Target:  5'- gGUGCCGu-GcCCAUGccCGCCGAGAc -3'
miRNA:   3'- -CGCGGUuuCuGGUGCauGCGGCUCUu -5'
6437 3' -54.2 NC_001847.1 + 68905 0.66 0.945136
Target:  5'- aUGCCGAGcGCCGCc-GCGCUGAGGu -3'
miRNA:   3'- cGCGGUUUcUGGUGcaUGCGGCUCUu -5'
6437 3' -54.2 NC_001847.1 + 86982 0.66 0.945136
Target:  5'- cCGCCGGccGGGCCgGCGcGCGCCGGc-- -3'
miRNA:   3'- cGCGGUU--UCUGG-UGCaUGCGGCUcuu -5'
6437 3' -54.2 NC_001847.1 + 12522 0.66 0.945136
Target:  5'- uCGUCAAAGACCAgGUcuACGCUGuuAu -3'
miRNA:   3'- cGCGGUUUCUGGUgCA--UGCGGCucUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.