miRNA display CGI

Results 1 - 20 of 1327 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6437	5'	-64.1	NC_001847.1	+	46880	0.65	0.575539
	Target:  5'- aGCCgGgaCGCGUGCGaGCGCCGcuucagcGAgGCu -3' miRNA:   3'- -CGGgCagGCGCGCGC-CGCGGU-------CUgCG- -5'
6437	5'	-64.1	NC_001847.1	+	1189	0.65	0.575539
	Target:  5'- -aCCG-CCGCG-GCcggcagcucgucgGGCGCCAGcuccaGCGCg -3' miRNA:   3'- cgGGCaGGCGCgCG-------------CCGCGGUC-----UGCG- -5'
6437	5'	-64.1	NC_001847.1	+	104002	0.65	0.575539
	Target:  5'- -aCCG-CCGCG-GCcggcagcucgucgGGCGCCAGcuccaGCGCg -3' miRNA:   3'- cgGGCaGGCGCgCG-------------CCGCGGUC-----UGCG- -5'
6437	5'	-64.1	NC_001847.1	+	85586	0.65	0.574583
	Target:  5'- gGCgCCGUCgacggGCGCGCcggcaaaGGCGCUAaagccaaagcgccGGCGCg -3' miRNA:   3'- -CG-GGCAGg----CGCGCG-------CCGCGGU-------------CUGCG- -5'
6437	5'	-64.1	NC_001847.1	+	75550	0.65	0.574583
	Target:  5'- uCCCGU-CGCGgGCGGacgcgcacgccaGCCAGA-GCu -3' miRNA:   3'- cGGGCAgGCGCgCGCCg-----------CGGUCUgCG- -5'
6437	5'	-64.1	NC_001847.1	+	87063	0.65	0.574583
	Target:  5'- aGCU--UCCGCGCgGCGuGCGCCcccgccuuucgcGGCGCg -3' miRNA:   3'- -CGGgcAGGCGCG-CGC-CGCGGu-----------CUGCG- -5'
6437	5'	-64.1	NC_001847.1	+	126901	0.66	0.570765
	Target:  5'- cGCUCGUugcugccgcaggCCaGCGCGUGGCGCagcugcuucugcuggCAcGGCGCc -3' miRNA:   3'- -CGGGCA------------GG-CGCGCGCCGCG---------------GU-CUGCG- -5'
6437	5'	-64.1	NC_001847.1	+	29352	0.66	0.569812
	Target:  5'- cGgCCGUugaaaacagcggcgaCCGCGCgGCGGCcggagcuGCCGcGCGCg -3' miRNA:   3'- -CgGGCA---------------GGCGCG-CGCCG-------CGGUcUGCG- -5'
6437	5'	-64.1	NC_001847.1	+	67200	0.66	0.566953
	Target:  5'- aGCacaCG-CCGUGC-CGaGCGgCGGGCGCg -3' miRNA:   3'- -CGg--GCaGGCGCGcGC-CGCgGUCUGCG- -5'
6437	5'	-64.1	NC_001847.1	+	9807	0.66	0.566953
	Target:  5'- gGCCgG-CCGCuggcguucaGCGCGGCuccgaaaacGCCcaAGGCGCc -3' miRNA:   3'- -CGGgCaGGCG---------CGCGCCG---------CGG--UCUGCG- -5'
6437	5'	-64.1	NC_001847.1	+	81329	0.66	0.566953
	Target:  5'- cCCCGcUCCgGCGCGCcagGGgGCgCAGACc- -3' miRNA:   3'- cGGGC-AGG-CGCGCG---CCgCG-GUCUGcg -5'
6437	5'	-64.1	NC_001847.1	+	90911	0.66	0.566953
	Target:  5'- uGCCgG-CCGCuaGCaGCaGCCGGGCGa -3' miRNA:   3'- -CGGgCaGGCGcgCGcCG-CGGUCUGCg -5'
6437	5'	-64.1	NC_001847.1	+	39363	0.66	0.566953
	Target:  5'- cGCCCGcgCCGCcCcCcGCGCCAGA-GCg -3' miRNA:   3'- -CGGGCa-GGCGcGcGcCGCGGUCUgCG- -5'
6437	5'	-64.1	NC_001847.1	+	16350	0.66	0.566953
	Target:  5'- gGCCUGgagGCGCugGCGGCuGCCGGugcCGCu -3' miRNA:   3'- -CGGGCaggCGCG--CGCCG-CGGUCu--GCG- -5'
6437	5'	-64.1	NC_001847.1	+	23783	0.66	0.566953
	Target:  5'- uGCCCGg--GCGCGaGGuCGCCcaGCGCg -3' miRNA:   3'- -CGGGCaggCGCGCgCC-GCGGucUGCG- -5'
6437	5'	-64.1	NC_001847.1	+	37506	0.66	0.566953
	Target:  5'- cGCCUuUuuG-GCGCGcCGCCuGGACGCa -3' miRNA:   3'- -CGGGcAggCgCGCGCcGCGG-UCUGCG- -5'
6437	5'	-64.1	NC_001847.1	+	84520	0.66	0.566953
	Target:  5'- aGCgCGUCCaugucguuGCGCcCGGCGa-AGGCGCc -3' miRNA:   3'- -CGgGCAGG--------CGCGcGCCGCggUCUGCG- -5'
6437	5'	-64.1	NC_001847.1	+	33758	0.66	0.566953
	Target:  5'- uGCCgGcggcgCCGCGggcagccccCGCGGCGCaAGcGCGCg -3' miRNA:   3'- -CGGgCa----GGCGC---------GCGCCGCGgUC-UGCG- -5'
6437	5'	-64.1	NC_001847.1	+	99524	0.66	0.566953
	Target:  5'- gGCCCcagcgCCGcCG-GCGGCGgCguGAUGCg -3' miRNA:   3'- -CGGGca---GGC-GCgCGCCGC-GguCUGCG- -5'
6437	5'	-64.1	NC_001847.1	+	102893	0.66	0.566953
	Target:  5'- cGCaCgCGUCUGCGUcaGCGGCuaUcGACGCc -3' miRNA:   3'- -CG-G-GCAGGCGCG--CGCCGcgGuCUGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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