miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 71114 0.66 0.960434
Target:  5'- gGCGUgaaCCGCGGGCAAGcCcgUCccGCCg- -3'
miRNA:   3'- -CGUA---GGCGCCCGUUCuGa-AGu-UGGag -5'
6442 3' -53.4 NC_001847.1 + 70693 0.66 0.952636
Target:  5'- cGCcgCCGCGGGCGGcGGCgggggCGcCCg- -3'
miRNA:   3'- -CGuaGGCGCCCGUU-CUGaa---GUuGGag -5'
6442 3' -53.4 NC_001847.1 + 69956 0.73 0.652326
Target:  5'- gGCGUCCGCGGGCGcGACcaUAAaCUCc -3'
miRNA:   3'- -CGUAGGCGCCCGUuCUGaaGUUgGAG- -5'
6442 3' -53.4 NC_001847.1 + 69709 0.7 0.784183
Target:  5'- -gGUCCGCGGcGCGcGGCUgCcGCCUCc -3'
miRNA:   3'- cgUAGGCGCC-CGUuCUGAaGuUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 69216 0.67 0.93911
Target:  5'- gGCGUCCGCGGGgAAcgccGACgccgCGACg-- -3'
miRNA:   3'- -CGUAGGCGCCCgUU----CUGaa--GUUGgag -5'
6442 3' -53.4 NC_001847.1 + 68937 0.66 0.952636
Target:  5'- gGCggCCGCGGGCugcGcCUcCAGCCa- -3'
miRNA:   3'- -CGuaGGCGCCCGuu-CuGAaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 68611 0.73 0.652326
Target:  5'- cGCGUCCaGCGGGCcgGGGACcgCAaggcggcgcGCCUCc -3'
miRNA:   3'- -CGUAGG-CGCCCG--UUCUGaaGU---------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 68503 0.66 0.952636
Target:  5'- gGCG-CCGC--GCGAGAacUCAACCUCg -3'
miRNA:   3'- -CGUaGGCGccCGUUCUgaAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 66674 0.7 0.82085
Target:  5'- uGCGcCCGCGcGGCGGGGCccCGGCCg- -3'
miRNA:   3'- -CGUaGGCGC-CCGUUCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 66410 0.67 0.911534
Target:  5'- aCAUCCGCGGcGCG-GGCUgacguaCAcCCUCc -3'
miRNA:   3'- cGUAGGCGCC-CGUuCUGAa-----GUuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 64110 0.7 0.82085
Target:  5'- cGUGUCCGCGGcGCcAGACgcgugcgCGGCCg- -3'
miRNA:   3'- -CGUAGGCGCC-CGuUCUGaa-----GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 63833 0.66 0.952636
Target:  5'- aCGUCCGCGGGCcccaaaAAGAagUCAaacGCCg- -3'
miRNA:   3'- cGUAGGCGCCCG------UUCUgaAGU---UGGag -5'
6442 3' -53.4 NC_001847.1 + 61264 0.69 0.870241
Target:  5'- cGCGUCCGCGGcGCGcgcGGGCgccgCGccgccGCCUa -3'
miRNA:   3'- -CGUAGGCGCC-CGU---UCUGaa--GU-----UGGAg -5'
6442 3' -53.4 NC_001847.1 + 60011 0.66 0.960434
Target:  5'- aGCGcgaCGUGGGCaAAGAgCgugccgUCGGCCUCu -3'
miRNA:   3'- -CGUag-GCGCCCG-UUCU-Ga-----AGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 58982 1.11 0.003232
Target:  5'- gGCAUCCGCGGGCAAGACUUCAACCUCc -3'
miRNA:   3'- -CGUAGGCGCCCGUUCUGAAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 58908 0.7 0.82085
Target:  5'- uGCG-CCGCGGGCGGGugUugcgCAGCa-- -3'
miRNA:   3'- -CGUaGGCGCCCGUUCugAa---GUUGgag -5'
6442 3' -53.4 NC_001847.1 + 58351 0.67 0.911534
Target:  5'- aGCAgagggCgGCcaGGcGCGGGACgUCGGCCUCg -3'
miRNA:   3'- -CGUa----GgCG--CC-CGUUCUGaAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 56357 0.79 0.321285
Target:  5'- uGC-UCCGCGGGCGcGGGCggcaCGACCUCg -3'
miRNA:   3'- -CGuAGGCGCCCGU-UCUGaa--GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 55935 0.67 0.928839
Target:  5'- cGCGUgcCCGUGGGCAuGGGCgagaUCAcggACCUg -3'
miRNA:   3'- -CGUA--GGCGCCCGU-UCUGa---AGU---UGGAg -5'
6442 3' -53.4 NC_001847.1 + 55363 0.69 0.854612
Target:  5'- cGCG-CCGCGGGCGccggAGACggUCGGCg-- -3'
miRNA:   3'- -CGUaGGCGCCCGU----UCUGa-AGUUGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.