Results 1 - 20 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6442 | 3' | -53.4 | NC_001847.1 | + | 58982 | 1.11 | 0.003232 |
Target: 5'- gGCAUCCGCGGGCAAGACUUCAACCUCc -3' miRNA: 3'- -CGUAGGCGCCCGUUCUGAAGUUGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 54392 | 0.81 | 0.274415 |
Target: 5'- gGCggCCGCGGGCGAGGCgggcgccgccgcggUUGGCCUCg -3' miRNA: 3'- -CGuaGGCGCCCGUUCUGa-------------AGUUGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 56357 | 0.79 | 0.321285 |
Target: 5'- uGC-UCCGCGGGCGcGGGCggcaCGACCUCg -3' miRNA: 3'- -CGuAGGCGCCCGU-UCUGaa--GUUGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 81976 | 0.77 | 0.412069 |
Target: 5'- uCAUCaCGCGGGCGgugcucggAGACUUCAGCUUg -3' miRNA: 3'- cGUAG-GCGCCCGU--------UCUGAAGUUGGAg -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 105677 | 0.76 | 0.477491 |
Target: 5'- cGCcucggCCGCGGGCGGcGCUUCGGCCg- -3' miRNA: 3'- -CGua---GGCGCCCGUUcUGAAGUUGGag -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 29495 | 0.76 | 0.487257 |
Target: 5'- cGCucuccggCCGCGGGCGGcGCUUCGGCCg- -3' miRNA: 3'- -CGua-----GGCGCCCGUUcUGAAGUUGGag -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 123474 | 0.74 | 0.599673 |
Target: 5'- gGCcgCCGCGGGCucGGCUggGGCCg- -3' miRNA: 3'- -CGuaGGCGCCCGuuCUGAagUUGGag -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 22219 | 0.74 | 0.599673 |
Target: 5'- cGCGUCCGUGGGCGuGGCgcccgugUAGCCg- -3' miRNA: 3'- -CGUAGGCGCCCGUuCUGaa-----GUUGGag -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 125032 | 0.74 | 0.599673 |
Target: 5'- cGCGUCCGUGGGCGuGGCgcccgugUAGCCg- -3' miRNA: 3'- -CGUAGGCGCCCGUuCUGaa-----GUUGGag -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 53370 | 0.74 | 0.610186 |
Target: 5'- cGCGUCauaCGCGGGCAGGGCUagCuGCCg- -3' miRNA: 3'- -CGUAG---GCGCCCGUUCUGAa-GuUGGag -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 103914 | 0.73 | 0.620715 |
Target: 5'- cGCggCCGCGGGCGGcGCcgccgCGGCCUCc -3' miRNA: 3'- -CGuaGGCGCCCGUUcUGaa---GUUGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 1101 | 0.73 | 0.620715 |
Target: 5'- cGCggCCGCGGGCGGcGCcgccgCGGCCUCc -3' miRNA: 3'- -CGuaGGCGCCCGUUcUGaa---GUUGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 117625 | 0.73 | 0.641794 |
Target: 5'- cGCAUCCGCGGu---GGCUUUggAACCUCc -3' miRNA: 3'- -CGUAGGCGCCcguuCUGAAG--UUGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 68611 | 0.73 | 0.652326 |
Target: 5'- cGCGUCCaGCGGGCcgGGGACcgCAaggcggcgcGCCUCc -3' miRNA: 3'- -CGUAGG-CGCCCG--UUCUGaaGU---------UGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 69956 | 0.73 | 0.652326 |
Target: 5'- gGCGUCCGCGGGCGcGACcaUAAaCUCc -3' miRNA: 3'- -CGUAGGCGCCCGUuCUGaaGUUgGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 75783 | 0.73 | 0.652326 |
Target: 5'- aCggCCGCGGGCucGGCgcggcgcgCGACCUCg -3' miRNA: 3'- cGuaGGCGCCCGuuCUGaa------GUUGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 52181 | 0.73 | 0.66284 |
Target: 5'- cGCGUCUuccagGCGGGCA--ACUggagCGGCCUCa -3' miRNA: 3'- -CGUAGG-----CGCCCGUucUGAa---GUUGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 134549 | 0.72 | 0.683781 |
Target: 5'- cGCGU-CGuCGGGCAGGACacaaagaCGGCCUCg -3' miRNA: 3'- -CGUAgGC-GCCCGUUCUGaa-----GUUGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 18082 | 0.72 | 0.694189 |
Target: 5'- gGCGgaggCGaGGGCGAGGCUUCcGCCUCc -3' miRNA: 3'- -CGUag--GCgCCCGUUCUGAAGuUGGAG- -5' |
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6442 | 3' | -53.4 | NC_001847.1 | + | 99931 | 0.72 | 0.694189 |
Target: 5'- aCGUCCGCGcGCAGGGCgccCAGCCg- -3' miRNA: 3'- cGUAGGCGCcCGUUCUGaa-GUUGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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