miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 58982 1.11 0.003232
Target:  5'- gGCAUCCGCGGGCAAGACUUCAACCUCc -3'
miRNA:   3'- -CGUAGGCGCCCGUUCUGAAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 54392 0.81 0.274415
Target:  5'- gGCggCCGCGGGCGAGGCgggcgccgccgcggUUGGCCUCg -3'
miRNA:   3'- -CGuaGGCGCCCGUUCUGa-------------AGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 56357 0.79 0.321285
Target:  5'- uGC-UCCGCGGGCGcGGGCggcaCGACCUCg -3'
miRNA:   3'- -CGuAGGCGCCCGU-UCUGaa--GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 81976 0.77 0.412069
Target:  5'- uCAUCaCGCGGGCGgugcucggAGACUUCAGCUUg -3'
miRNA:   3'- cGUAG-GCGCCCGU--------UCUGAAGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 105677 0.76 0.477491
Target:  5'- cGCcucggCCGCGGGCGGcGCUUCGGCCg- -3'
miRNA:   3'- -CGua---GGCGCCCGUUcUGAAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 29495 0.76 0.487257
Target:  5'- cGCucuccggCCGCGGGCGGcGCUUCGGCCg- -3'
miRNA:   3'- -CGua-----GGCGCCCGUUcUGAAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 123474 0.74 0.599673
Target:  5'- gGCcgCCGCGGGCucGGCUggGGCCg- -3'
miRNA:   3'- -CGuaGGCGCCCGuuCUGAagUUGGag -5'
6442 3' -53.4 NC_001847.1 + 22219 0.74 0.599673
Target:  5'- cGCGUCCGUGGGCGuGGCgcccgugUAGCCg- -3'
miRNA:   3'- -CGUAGGCGCCCGUuCUGaa-----GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 125032 0.74 0.599673
Target:  5'- cGCGUCCGUGGGCGuGGCgcccgugUAGCCg- -3'
miRNA:   3'- -CGUAGGCGCCCGUuCUGaa-----GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 53370 0.74 0.610186
Target:  5'- cGCGUCauaCGCGGGCAGGGCUagCuGCCg- -3'
miRNA:   3'- -CGUAG---GCGCCCGUUCUGAa-GuUGGag -5'
6442 3' -53.4 NC_001847.1 + 103914 0.73 0.620715
Target:  5'- cGCggCCGCGGGCGGcGCcgccgCGGCCUCc -3'
miRNA:   3'- -CGuaGGCGCCCGUUcUGaa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 1101 0.73 0.620715
Target:  5'- cGCggCCGCGGGCGGcGCcgccgCGGCCUCc -3'
miRNA:   3'- -CGuaGGCGCCCGUUcUGaa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 117625 0.73 0.641794
Target:  5'- cGCAUCCGCGGu---GGCUUUggAACCUCc -3'
miRNA:   3'- -CGUAGGCGCCcguuCUGAAG--UUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 68611 0.73 0.652326
Target:  5'- cGCGUCCaGCGGGCcgGGGACcgCAaggcggcgcGCCUCc -3'
miRNA:   3'- -CGUAGG-CGCCCG--UUCUGaaGU---------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 69956 0.73 0.652326
Target:  5'- gGCGUCCGCGGGCGcGACcaUAAaCUCc -3'
miRNA:   3'- -CGUAGGCGCCCGUuCUGaaGUUgGAG- -5'
6442 3' -53.4 NC_001847.1 + 75783 0.73 0.652326
Target:  5'- aCggCCGCGGGCucGGCgcggcgcgCGACCUCg -3'
miRNA:   3'- cGuaGGCGCCCGuuCUGaa------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 52181 0.73 0.66284
Target:  5'- cGCGUCUuccagGCGGGCA--ACUggagCGGCCUCa -3'
miRNA:   3'- -CGUAGG-----CGCCCGUucUGAa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 134549 0.72 0.683781
Target:  5'- cGCGU-CGuCGGGCAGGACacaaagaCGGCCUCg -3'
miRNA:   3'- -CGUAgGC-GCCCGUUCUGaa-----GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 18082 0.72 0.694189
Target:  5'- gGCGgaggCGaGGGCGAGGCUUCcGCCUCc -3'
miRNA:   3'- -CGUag--GCgCCCGUUCUGAAGuUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 99931 0.72 0.694189
Target:  5'- aCGUCCGCGcGCAGGGCgccCAGCCg- -3'
miRNA:   3'- cGUAGGCGCcCGUUCUGaa-GUUGGag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.