miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 971 0.67 0.923324
Target:  5'- gGCAcCCGgGccGGCGGGGCUUCcGCCg- -3'
miRNA:   3'- -CGUaGGCgC--CCGUUCUGAAGuUGGag -5'
6442 3' -53.4 NC_001847.1 + 1101 0.73 0.620715
Target:  5'- cGCggCCGCGGGCGGcGCcgccgCGGCCUCc -3'
miRNA:   3'- -CGuaGGCGCCCGUUcUGaa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 2093 0.68 0.877719
Target:  5'- cGCGgggcCCGCGcGGCGgcGGGCcgCGAUCUCg -3'
miRNA:   3'- -CGUa---GGCGC-CCGU--UCUGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 3980 0.66 0.956655
Target:  5'- gGCG-CCGgGGGCcGGGCgcgCGGCCcCg -3'
miRNA:   3'- -CGUaGGCgCCCGuUCUGaa-GUUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 4318 0.68 0.880646
Target:  5'- cGCcgCCuGCGGGUAgugcuccgccauguaGGGCgccagcUCGGCCUCg -3'
miRNA:   3'- -CGuaGG-CGCCCGU---------------UCUGa-----AGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 7731 0.69 0.870241
Target:  5'- cGCAgggCGCGGGCGcggAGGCggCGGCCa- -3'
miRNA:   3'- -CGUag-GCGCCCGU---UCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 9232 0.67 0.93911
Target:  5'- -aGUCgCGgGGGCGGGGCUgaUUGACCg- -3'
miRNA:   3'- cgUAG-GCgCCCGUUCUGA--AGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 11260 0.71 0.75513
Target:  5'- aGCuugCCGCGGGCGcuGGGCUUCcugaauuACCa- -3'
miRNA:   3'- -CGua-GGCGCCCGU--UCUGAAGu------UGGag -5'
6442 3' -53.4 NC_001847.1 + 12085 0.68 0.905261
Target:  5'- aGCG-CCGCGGGUccGGCgcccgCGGCCg- -3'
miRNA:   3'- -CGUaGGCGCCCGuuCUGaa---GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 13298 0.68 0.877719
Target:  5'- cGCGcuaCGCGGGCGccGGGCUgcagUCGGCCg- -3'
miRNA:   3'- -CGUag-GCGCCCGU--UCUGA----AGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 13481 0.66 0.952636
Target:  5'- ---gUCGCGGGCuuGGCcUCGGCCaUCa -3'
miRNA:   3'- cguaGGCGCCCGuuCUGaAGUUGG-AG- -5'
6442 3' -53.4 NC_001847.1 + 14901 0.67 0.928839
Target:  5'- cCGUCCGCGcGCAGGcCgacuGCCUCg -3'
miRNA:   3'- cGUAGGCGCcCGUUCuGaaguUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 15925 0.69 0.854612
Target:  5'- uCGUCCGUGGGguAGGCga-AGCC-Cg -3'
miRNA:   3'- cGUAGGCGCCCguUCUGaagUUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 16312 0.66 0.956655
Target:  5'- uCAcCCGCGGcGCGGGugUaggCAAgCUCa -3'
miRNA:   3'- cGUaGGCGCC-CGUUCugAa--GUUgGAG- -5'
6442 3' -53.4 NC_001847.1 + 17122 0.68 0.877719
Target:  5'- gGCAgguuUCCGCuGGCGcucccGGCUUCGuCCUCg -3'
miRNA:   3'- -CGU----AGGCGcCCGUu----CUGAAGUuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 17771 0.66 0.960067
Target:  5'- aGCAUCCacuuGCGcuccuucGGCGGGGCUuugcUCGGCCg- -3'
miRNA:   3'- -CGUAGG----CGC-------CCGUUCUGA----AGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 17882 0.66 0.956655
Target:  5'- cCGUCCuCGGGCGGGGCgggCGGCg-- -3'
miRNA:   3'- cGUAGGcGCCCGUUCUGaa-GUUGgag -5'
6442 3' -53.4 NC_001847.1 + 18082 0.72 0.694189
Target:  5'- gGCGgaggCGaGGGCGAGGCUUCcGCCUCc -3'
miRNA:   3'- -CGUag--GCgCCCGUUCUGAAGuUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 18760 0.69 0.846473
Target:  5'- cGCcgCCGCGGcUAAGGCggCGGCCg- -3'
miRNA:   3'- -CGuaGGCGCCcGUUCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 18955 0.67 0.93911
Target:  5'- gGCGUCCGgGcGGCGAcGACcagcgCGGCCg- -3'
miRNA:   3'- -CGUAGGCgC-CCGUU-CUGaa---GUUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.