miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 54392 0.81 0.274415
Target:  5'- gGCggCCGCGGGCGAGGCgggcgccgccgcggUUGGCCUCg -3'
miRNA:   3'- -CGuaGGCGCCCGUUCUGa-------------AGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 52300 0.71 0.764943
Target:  5'- cGCGaCCGCGGGCGcGGGCggcgcCAACCg- -3'
miRNA:   3'- -CGUaGGCGCCCGU-UCUGaa---GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 58908 0.7 0.82085
Target:  5'- uGCG-CCGCGGGCGGGugUugcgCAGCa-- -3'
miRNA:   3'- -CGUaGGCGCCCGUUCugAa---GUUGgag -5'
6442 3' -53.4 NC_001847.1 + 114428 0.66 0.960434
Target:  5'- aGCgGUCCGCcaGCGGGGCcUCGuCCUCg -3'
miRNA:   3'- -CG-UAGGCGccCGUUCUGaAGUuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 103914 0.73 0.620715
Target:  5'- cGCggCCGCGGGCGGcGCcgccgCGGCCUCc -3'
miRNA:   3'- -CGuaGGCGCCCGUUcUGaa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 117625 0.73 0.641794
Target:  5'- cGCAUCCGCGGu---GGCUUUggAACCUCc -3'
miRNA:   3'- -CGUAGGCGCCcguuCUGAAG--UUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 52181 0.73 0.66284
Target:  5'- cGCGUCUuccagGCGGGCA--ACUggagCGGCCUCa -3'
miRNA:   3'- -CGUAGG-----CGCCCGUucUGAa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 18082 0.72 0.694189
Target:  5'- gGCGgaggCGaGGGCGAGGCUUCcGCCUCc -3'
miRNA:   3'- -CGUag--GCgCCCGUUCUGAAGuUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 55138 0.72 0.714829
Target:  5'- cGCAUCCgcGCGGGCGcgGGGCgUCAccGCCg- -3'
miRNA:   3'- -CGUAGG--CGCCCGU--UCUGaAGU--UGGag -5'
6442 3' -53.4 NC_001847.1 + 33896 0.71 0.764943
Target:  5'- cGCGUggCCGCGGGCGugcaGGACcgccuguggCAGCCUUc -3'
miRNA:   3'- -CGUA--GGCGCCCGU----UCUGaa-------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 84536 0.71 0.735169
Target:  5'- -gGUUgGCGGGCGGGGCggggCGugcGCCUCg -3'
miRNA:   3'- cgUAGgCGCCCGUUCUGaa--GU---UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 30783 0.72 0.714829
Target:  5'- cGCGUCUGCGGGCGcGGACgcc-GCCg- -3'
miRNA:   3'- -CGUAGGCGCCCGU-UCUGaaguUGGag -5'
6442 3' -53.4 NC_001847.1 + 81976 0.77 0.412069
Target:  5'- uCAUCaCGCGGGCGgugcucggAGACUUCAGCUUg -3'
miRNA:   3'- cGUAG-GCGCCCGU--------UCUGAAGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 11260 0.71 0.75513
Target:  5'- aGCuugCCGCGGGCGcuGGGCUUCcugaauuACCa- -3'
miRNA:   3'- -CGua-GGCGCCCGU--UCUGAAGu------UGGag -5'
6442 3' -53.4 NC_001847.1 + 29495 0.76 0.487257
Target:  5'- cGCucuccggCCGCGGGCGGcGCUUCGGCCg- -3'
miRNA:   3'- -CGua-----GGCGCCCGUUcUGAAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 35565 0.72 0.704541
Target:  5'- cGCGaCCGCgacgaGGGCGccGGGCUggcCAACCUCa -3'
miRNA:   3'- -CGUaGGCG-----CCCGU--UCUGAa--GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 101512 0.71 0.75513
Target:  5'- uGCA-CCGCGGGUGuuug-UCGACCUCu -3'
miRNA:   3'- -CGUaGGCGCCCGUucugaAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 64110 0.7 0.82085
Target:  5'- cGUGUCCGCGGcGCcAGACgcgugcgCGGCCg- -3'
miRNA:   3'- -CGUAGGCGCC-CGuUCUGaa-----GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 125032 0.74 0.599673
Target:  5'- cGCGUCCGUGGGCGuGGCgcccgugUAGCCg- -3'
miRNA:   3'- -CGUAGGCGCCCGUuCUGaa-----GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 75783 0.73 0.652326
Target:  5'- aCggCCGCGGGCucGGCgcggcgcgCGACCUCg -3'
miRNA:   3'- cGuaGGCGCCCGuuCUGaa------GUUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.