miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 123505 0.66 0.920953
Target:  5'- aGCGGGGCCGggGCcagggCUGCCgCGGGc -3'
miRNA:   3'- -UGCUCCGGU--UGaaauaGGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 35795 0.66 0.896375
Target:  5'- -aGGGGCCAAg---AUCCGCCCgGc- -3'
miRNA:   3'- ugCUCCGGUUgaaaUAGGCGGGgCuc -5'
6442 5' -55.2 NC_001847.1 + 34453 0.66 0.896375
Target:  5'- gACGAGGCC-GCggUggCCGCCggcggCGAGg -3'
miRNA:   3'- -UGCUCCGGuUGaaAuaGGCGGg----GCUC- -5'
6442 5' -55.2 NC_001847.1 + 122774 0.66 0.920953
Target:  5'- cCGAGGCCGcaGCcgccgaCGCuCCCGAGc -3'
miRNA:   3'- uGCUCCGGU--UGaaauagGCG-GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 133634 0.66 0.896375
Target:  5'- cCGAGGCCGccuacGCgcggcUCUaCCCCGAGg -3'
miRNA:   3'- uGCUCCGGU-----UGaaau-AGGcGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 6113 0.66 0.900955
Target:  5'- cGCGAGGCgCGGCgcgagcgccucgCCGCCaUCGGGg -3'
miRNA:   3'- -UGCUCCG-GUUGaaaua-------GGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 61959 0.66 0.902882
Target:  5'- cGCGcGGGCCGAC----UCCGCCgCCGc- -3'
miRNA:   3'- -UGC-UCCGGUUGaaauAGGCGG-GGCuc -5'
6442 5' -55.2 NC_001847.1 + 106386 0.66 0.909148
Target:  5'- gGCGc-GCCAGCUgcagGUCCggGCCCgCGAGc -3'
miRNA:   3'- -UGCucCGGUUGAaa--UAGG--CGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 117271 0.66 0.909148
Target:  5'- uGCGGGGCCGccgUUUUGgggcgccCCGCgCCCGAc -3'
miRNA:   3'- -UGCUCCGGUu--GAAAUa------GGCG-GGGCUc -5'
6442 5' -55.2 NC_001847.1 + 30821 0.66 0.896375
Target:  5'- cCGAGGCCGccuacGCgcggcUCUaCCCCGAGg -3'
miRNA:   3'- uGCUCCGGU-----UGaaau-AGGcGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 34294 0.66 0.896375
Target:  5'- gGCG-GGCCGGCgc--UCCGgCCCUGGc -3'
miRNA:   3'- -UGCuCCGGUUGaaauAGGC-GGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 85027 0.66 0.900955
Target:  5'- cCGAGGCCAGCcggcgcucuacgCCGCCCgGc- -3'
miRNA:   3'- uGCUCCGGUUGaaaua-------GGCGGGgCuc -5'
6442 5' -55.2 NC_001847.1 + 86987 0.66 0.920953
Target:  5'- gGCcGGGCCGGCgcgcgCCGgCCCGGc -3'
miRNA:   3'- -UGcUCCGGUUGaaauaGGCgGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 31223 0.66 0.920953
Target:  5'- -gGAGGCCGcgGCggcg-CCGCCCgCGGc -3'
miRNA:   3'- ugCUCCGGU--UGaaauaGGCGGG-GCUc -5'
6442 5' -55.2 NC_001847.1 + 35221 0.66 0.915173
Target:  5'- gGCGGGGUCcgUUgcgcCUGCCUCGAGg -3'
miRNA:   3'- -UGCUCCGGuuGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 29891 0.66 0.913987
Target:  5'- gGCGAGGCggCGGCccugccggCCGCCgCGGGg -3'
miRNA:   3'- -UGCUCCG--GUUGaaaua---GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 80662 0.66 0.909148
Target:  5'- gGCGccGCCGucgUUGUCCGUCCCGc- -3'
miRNA:   3'- -UGCucCGGUugaAAUAGGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 3573 0.66 0.909148
Target:  5'- gGCGc-GCCAGCUgcagGUCCggGCCCgCGAGc -3'
miRNA:   3'- -UGCucCGGUUGAaa--UAGG--CGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 64746 0.66 0.908533
Target:  5'- cACGAgguccguaaucuuGGCCAGCgcgagcUCgCGCCCCGGc -3'
miRNA:   3'- -UGCU-------------CCGGUUGaaau--AG-GCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 44197 0.66 0.902882
Target:  5'- uCGAGaGCCAGCUggugUUGCCCCa-- -3'
miRNA:   3'- uGCUC-CGGUUGAaauaGGCGGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.