miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 59018 1.09 0.002831
Target:  5'- gACGAGGCCAACUUUAUCCGCCCCGAGg -3'
miRNA:   3'- -UGCUCCGGUUGAAAUAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 20090 0.79 0.257361
Target:  5'- gGCGAGcGCCAGCUggagcUCUGCCCCGGa -3'
miRNA:   3'- -UGCUC-CGGUUGAaau--AGGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 116765 0.77 0.365067
Target:  5'- cGCGGGGCCuGCUggGUCUGCgCCGAc -3'
miRNA:   3'- -UGCUCCGGuUGAaaUAGGCGgGGCUc -5'
6442 5' -55.2 NC_001847.1 + 58771 0.76 0.39773
Target:  5'- cCGAGGCCGugaagagGCgaccgggGUCCGCCCCGGc -3'
miRNA:   3'- uGCUCCGGU-------UGaaa----UAGGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 35054 0.75 0.443166
Target:  5'- gACGGGGCUgcuGACgUUcgCCGCCUCGGGa -3'
miRNA:   3'- -UGCUCCGG---UUGaAAuaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 96422 0.75 0.450556
Target:  5'- gGCGGGGCCGGCggcaggcgCgGCCCCGGa -3'
miRNA:   3'- -UGCUCCGGUUGaaaua---GgCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 30117 0.74 0.479811
Target:  5'- cGCGGcgcuggcGGCCuACUg---CCGCCCCGAGg -3'
miRNA:   3'- -UGCU-------CCGGuUGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 132930 0.74 0.479811
Target:  5'- cGCGGcgcuggcGGCCuACUg---CCGCCCCGAGg -3'
miRNA:   3'- -UGCU-------CCGGuUGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 101060 0.74 0.500147
Target:  5'- cCGAGGCCGGCcccggggCCGCCgCGGGg -3'
miRNA:   3'- uGCUCCGGUUGaaaua--GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 130936 0.73 0.529833
Target:  5'- cCGAGGCCGGCgacGUUgGgCCCGAGg -3'
miRNA:   3'- uGCUCCGGUUGaaaUAGgCgGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 28123 0.73 0.529833
Target:  5'- cCGAGGCCGGCgacGUUgGgCCCGAGg -3'
miRNA:   3'- uGCUCCGGUUGaaaUAGgCgGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 4215 0.73 0.539873
Target:  5'- aACGucGCCGGCcucgGUCCugGCCCCGAGg -3'
miRNA:   3'- -UGCucCGGUUGaaa-UAGG--CGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 107028 0.73 0.539873
Target:  5'- aACGucGCCGGCcucgGUCCugGCCCCGAGg -3'
miRNA:   3'- -UGCucCGGUUGaaa-UAGG--CGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 53598 0.73 0.549978
Target:  5'- cGCGGGGCCGGCgagcUCgGCCgCCGAa -3'
miRNA:   3'- -UGCUCCGGUUGaaauAGgCGG-GGCUc -5'
6442 5' -55.2 NC_001847.1 + 70803 0.72 0.601234
Target:  5'- gGCGGGGCCGGgaggggAUCCGCCgagcgCCGAGu -3'
miRNA:   3'- -UGCUCCGGUUgaaa--UAGGCGG-----GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 131388 0.72 0.611584
Target:  5'- cGCGAgGGCCu-CUggGaCUGCCCCGAGa -3'
miRNA:   3'- -UGCU-CCGGuuGAaaUaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 28575 0.72 0.611584
Target:  5'- cGCGAgGGCCu-CUggGaCUGCCCCGAGa -3'
miRNA:   3'- -UGCU-CCGGuuGAaaUaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 585 0.72 0.620913
Target:  5'- gACGAGGCCGuCUUugUGUCCugcccgacgacgcGCCCCGuGu -3'
miRNA:   3'- -UGCUCCGGUuGAA--AUAGG-------------CGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 761 0.72 0.62195
Target:  5'- gGCGAGGCCGGC-----CCGCCgCCGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCGG-GGCUc -5'
6442 5' -55.2 NC_001847.1 + 76781 0.72 0.62195
Target:  5'- uACGAGGCCGACguc--CCGCgCCUGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCG-GGGCUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.