Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6442 | 5' | -55.2 | NC_001847.1 | + | 59018 | 1.09 | 0.002831 |
Target: 5'- gACGAGGCCAACUUUAUCCGCCCCGAGg -3' miRNA: 3'- -UGCUCCGGUUGAAAUAGGCGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 20090 | 0.79 | 0.257361 |
Target: 5'- gGCGAGcGCCAGCUggagcUCUGCCCCGGa -3' miRNA: 3'- -UGCUC-CGGUUGAaau--AGGCGGGGCUc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 116765 | 0.77 | 0.365067 |
Target: 5'- cGCGGGGCCuGCUggGUCUGCgCCGAc -3' miRNA: 3'- -UGCUCCGGuUGAaaUAGGCGgGGCUc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 58771 | 0.76 | 0.39773 |
Target: 5'- cCGAGGCCGugaagagGCgaccgggGUCCGCCCCGGc -3' miRNA: 3'- uGCUCCGGU-------UGaaa----UAGGCGGGGCUc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 35054 | 0.75 | 0.443166 |
Target: 5'- gACGGGGCUgcuGACgUUcgCCGCCUCGGGa -3' miRNA: 3'- -UGCUCCGG---UUGaAAuaGGCGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 96422 | 0.75 | 0.450556 |
Target: 5'- gGCGGGGCCGGCggcaggcgCgGCCCCGGa -3' miRNA: 3'- -UGCUCCGGUUGaaaua---GgCGGGGCUc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 30117 | 0.74 | 0.479811 |
Target: 5'- cGCGGcgcuggcGGCCuACUg---CCGCCCCGAGg -3' miRNA: 3'- -UGCU-------CCGGuUGAaauaGGCGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 132930 | 0.74 | 0.479811 |
Target: 5'- cGCGGcgcuggcGGCCuACUg---CCGCCCCGAGg -3' miRNA: 3'- -UGCU-------CCGGuUGAaauaGGCGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 101060 | 0.74 | 0.500147 |
Target: 5'- cCGAGGCCGGCcccggggCCGCCgCGGGg -3' miRNA: 3'- uGCUCCGGUUGaaaua--GGCGGgGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 130936 | 0.73 | 0.529833 |
Target: 5'- cCGAGGCCGGCgacGUUgGgCCCGAGg -3' miRNA: 3'- uGCUCCGGUUGaaaUAGgCgGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 28123 | 0.73 | 0.529833 |
Target: 5'- cCGAGGCCGGCgacGUUgGgCCCGAGg -3' miRNA: 3'- uGCUCCGGUUGaaaUAGgCgGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 4215 | 0.73 | 0.539873 |
Target: 5'- aACGucGCCGGCcucgGUCCugGCCCCGAGg -3' miRNA: 3'- -UGCucCGGUUGaaa-UAGG--CGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 107028 | 0.73 | 0.539873 |
Target: 5'- aACGucGCCGGCcucgGUCCugGCCCCGAGg -3' miRNA: 3'- -UGCucCGGUUGaaa-UAGG--CGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 53598 | 0.73 | 0.549978 |
Target: 5'- cGCGGGGCCGGCgagcUCgGCCgCCGAa -3' miRNA: 3'- -UGCUCCGGUUGaaauAGgCGG-GGCUc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 70803 | 0.72 | 0.601234 |
Target: 5'- gGCGGGGCCGGgaggggAUCCGCCgagcgCCGAGu -3' miRNA: 3'- -UGCUCCGGUUgaaa--UAGGCGG-----GGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 131388 | 0.72 | 0.611584 |
Target: 5'- cGCGAgGGCCu-CUggGaCUGCCCCGAGa -3' miRNA: 3'- -UGCU-CCGGuuGAaaUaGGCGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 28575 | 0.72 | 0.611584 |
Target: 5'- cGCGAgGGCCu-CUggGaCUGCCCCGAGa -3' miRNA: 3'- -UGCU-CCGGuuGAaaUaGGCGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 585 | 0.72 | 0.620913 |
Target: 5'- gACGAGGCCGuCUUugUGUCCugcccgacgacgcGCCCCGuGu -3' miRNA: 3'- -UGCUCCGGUuGAA--AUAGG-------------CGGGGCuC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 761 | 0.72 | 0.62195 |
Target: 5'- gGCGAGGCCGGC-----CCGCCgCCGGc -3' miRNA: 3'- -UGCUCCGGUUGaaauaGGCGG-GGCUc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 76781 | 0.72 | 0.62195 |
Target: 5'- uACGAGGCCGACguc--CCGCgCCUGGc -3' miRNA: 3'- -UGCUCCGGUUGaaauaGGCG-GGGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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