miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 76 0.67 0.875452
Target:  5'- gGCGggcccGGGCCcGCUcUGggcUCCGCCCCuGGGu -3'
miRNA:   3'- -UGC-----UCCGGuUGAaAU---AGGCGGGG-CUC- -5'
6442 5' -55.2 NC_001847.1 + 585 0.72 0.620913
Target:  5'- gACGAGGCCGuCUUugUGUCCugcccgacgacgcGCCCCGuGu -3'
miRNA:   3'- -UGCUCCGGUuGAA--AUAGG-------------CGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 624 0.67 0.888256
Target:  5'- cGCGcGGCCcGCgccuccccCCGcCCCCGAGg -3'
miRNA:   3'- -UGCuCCGGuUGaaaua---GGC-GGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 761 0.72 0.62195
Target:  5'- gGCGAGGCCGGC-----CCGCCgCCGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCGG-GGCUc -5'
6442 5' -55.2 NC_001847.1 + 2916 0.7 0.714582
Target:  5'- aGCGGGGCC-ACg--GUCCGCgCCGc- -3'
miRNA:   3'- -UGCUCCGGuUGaaaUAGGCGgGGCuc -5'
6442 5' -55.2 NC_001847.1 + 3573 0.66 0.909148
Target:  5'- gGCGc-GCCAGCUgcagGUCCggGCCCgCGAGc -3'
miRNA:   3'- -UGCucCGGUUGAaa--UAGG--CGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 3997 0.72 0.62195
Target:  5'- aGCGcGGCCAAgUUaacaGUCCGCCCCccGAGc -3'
miRNA:   3'- -UGCuCCGGUUgAAa---UAGGCGGGG--CUC- -5'
6442 5' -55.2 NC_001847.1 + 4036 0.69 0.792193
Target:  5'- cGCGGGGCC-GCUUUGguUCUGgUCCCGGc -3'
miRNA:   3'- -UGCUCCGGuUGAAAU--AGGC-GGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 4215 0.73 0.539873
Target:  5'- aACGucGCCGGCcucgGUCCugGCCCCGAGg -3'
miRNA:   3'- -UGCucCGGUUGaaa-UAGG--CGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 6113 0.66 0.900955
Target:  5'- cGCGAGGCgCGGCgcgagcgccucgCCGCCaUCGGGg -3'
miRNA:   3'- -UGCUCCG-GUUGaaaua-------GGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 6960 0.71 0.694265
Target:  5'- cGCGGGGUCGcgGCggcgcuUCCGCCCgCGGGc -3'
miRNA:   3'- -UGCUCCGGU--UGaaau--AGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 8730 0.71 0.668577
Target:  5'- cCGAGGCCcagccccggcaaaGGCaagguaagcgcAUCCGCCCCGGGg -3'
miRNA:   3'- uGCUCCGG-------------UUGaaa--------UAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 9894 0.69 0.792193
Target:  5'- uGCGAGGCCGucGCgcUcgUgGCCgCCGAGu -3'
miRNA:   3'- -UGCUCCGGU--UGaaAuaGgCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 9947 0.71 0.684021
Target:  5'- cCGcGGCCcgGGCgccuUCUGCCCCGAGg -3'
miRNA:   3'- uGCuCCGG--UUGaaauAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 10393 0.69 0.782912
Target:  5'- gGCGGGGCC-GCUUUAUgacggcCCGUCCCc-- -3'
miRNA:   3'- -UGCUCCGGuUGAAAUA------GGCGGGGcuc -5'
6442 5' -55.2 NC_001847.1 + 11403 0.69 0.773492
Target:  5'- -aGAGGCCAugUUgcggcccCCGUCgCCGAGc -3'
miRNA:   3'- ugCUCCGGUugAAaua----GGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 14169 0.68 0.844458
Target:  5'- gGCGAcGGCCGcgcuuacgcggcGCUggGUCCGCCCa--- -3'
miRNA:   3'- -UGCU-CCGGU------------UGAaaUAGGCGGGgcuc -5'
6442 5' -55.2 NC_001847.1 + 14204 0.67 0.882656
Target:  5'- gGCGGGGCUGGCg--GUCagGCCggCCGGGg -3'
miRNA:   3'- -UGCUCCGGUUGaaaUAGg-CGG--GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 14908 0.68 0.844458
Target:  5'- cGCGcAGGCCGACUgcc-UCGCCgCGAu -3'
miRNA:   3'- -UGC-UCCGGUUGAaauaGGCGGgGCUc -5'
6442 5' -55.2 NC_001847.1 + 16762 0.7 0.744492
Target:  5'- cGCGAGGCCGAUgagaaugCCGCgCCGc- -3'
miRNA:   3'- -UGCUCCGGUUGaaaua--GGCGgGGCuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.