Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6442 | 5' | -55.2 | NC_001847.1 | + | 76 | 0.67 | 0.875452 |
Target: 5'- gGCGggcccGGGCCcGCUcUGggcUCCGCCCCuGGGu -3' miRNA: 3'- -UGC-----UCCGGuUGAaAU---AGGCGGGG-CUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 585 | 0.72 | 0.620913 |
Target: 5'- gACGAGGCCGuCUUugUGUCCugcccgacgacgcGCCCCGuGu -3' miRNA: 3'- -UGCUCCGGUuGAA--AUAGG-------------CGGGGCuC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 624 | 0.67 | 0.888256 |
Target: 5'- cGCGcGGCCcGCgccuccccCCGcCCCCGAGg -3' miRNA: 3'- -UGCuCCGGuUGaaaua---GGC-GGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 761 | 0.72 | 0.62195 |
Target: 5'- gGCGAGGCCGGC-----CCGCCgCCGGc -3' miRNA: 3'- -UGCUCCGGUUGaaauaGGCGG-GGCUc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 2916 | 0.7 | 0.714582 |
Target: 5'- aGCGGGGCC-ACg--GUCCGCgCCGc- -3' miRNA: 3'- -UGCUCCGGuUGaaaUAGGCGgGGCuc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 3573 | 0.66 | 0.909148 |
Target: 5'- gGCGc-GCCAGCUgcagGUCCggGCCCgCGAGc -3' miRNA: 3'- -UGCucCGGUUGAaa--UAGG--CGGG-GCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 3997 | 0.72 | 0.62195 |
Target: 5'- aGCGcGGCCAAgUUaacaGUCCGCCCCccGAGc -3' miRNA: 3'- -UGCuCCGGUUgAAa---UAGGCGGGG--CUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 4036 | 0.69 | 0.792193 |
Target: 5'- cGCGGGGCC-GCUUUGguUCUGgUCCCGGc -3' miRNA: 3'- -UGCUCCGGuUGAAAU--AGGC-GGGGCUc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 4215 | 0.73 | 0.539873 |
Target: 5'- aACGucGCCGGCcucgGUCCugGCCCCGAGg -3' miRNA: 3'- -UGCucCGGUUGaaa-UAGG--CGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 6113 | 0.66 | 0.900955 |
Target: 5'- cGCGAGGCgCGGCgcgagcgccucgCCGCCaUCGGGg -3' miRNA: 3'- -UGCUCCG-GUUGaaaua-------GGCGG-GGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 6960 | 0.71 | 0.694265 |
Target: 5'- cGCGGGGUCGcgGCggcgcuUCCGCCCgCGGGc -3' miRNA: 3'- -UGCUCCGGU--UGaaau--AGGCGGG-GCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 8730 | 0.71 | 0.668577 |
Target: 5'- cCGAGGCCcagccccggcaaaGGCaagguaagcgcAUCCGCCCCGGGg -3' miRNA: 3'- uGCUCCGG-------------UUGaaa--------UAGGCGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 9894 | 0.69 | 0.792193 |
Target: 5'- uGCGAGGCCGucGCgcUcgUgGCCgCCGAGu -3' miRNA: 3'- -UGCUCCGGU--UGaaAuaGgCGG-GGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 9947 | 0.71 | 0.684021 |
Target: 5'- cCGcGGCCcgGGCgccuUCUGCCCCGAGg -3' miRNA: 3'- uGCuCCGG--UUGaaauAGGCGGGGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 10393 | 0.69 | 0.782912 |
Target: 5'- gGCGGGGCC-GCUUUAUgacggcCCGUCCCc-- -3' miRNA: 3'- -UGCUCCGGuUGAAAUA------GGCGGGGcuc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 11403 | 0.69 | 0.773492 |
Target: 5'- -aGAGGCCAugUUgcggcccCCGUCgCCGAGc -3' miRNA: 3'- ugCUCCGGUugAAaua----GGCGG-GGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 14169 | 0.68 | 0.844458 |
Target: 5'- gGCGAcGGCCGcgcuuacgcggcGCUggGUCCGCCCa--- -3' miRNA: 3'- -UGCU-CCGGU------------UGAaaUAGGCGGGgcuc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 14204 | 0.67 | 0.882656 |
Target: 5'- gGCGGGGCUGGCg--GUCagGCCggCCGGGg -3' miRNA: 3'- -UGCUCCGGUUGaaaUAGg-CGG--GGCUC- -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 14908 | 0.68 | 0.844458 |
Target: 5'- cGCGcAGGCCGACUgcc-UCGCCgCGAu -3' miRNA: 3'- -UGC-UCCGGUUGAaauaGGCGGgGCUc -5' |
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6442 | 5' | -55.2 | NC_001847.1 | + | 16762 | 0.7 | 0.744492 |
Target: 5'- cGCGAGGCCGAUgagaaugCCGCgCCGc- -3' miRNA: 3'- -UGCUCCGGUUGaaaua--GGCGgGGCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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