miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 20090 0.79 0.257361
Target:  5'- gGCGAGcGCCAGCUggagcUCUGCCCCGGa -3'
miRNA:   3'- -UGCUC-CGGUUGAaau--AGGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 130516 0.71 0.694265
Target:  5'- cGCGAGcGCCGGCgggccgcCCGCgCCGAGc -3'
miRNA:   3'- -UGCUC-CGGUUGaaaua--GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 105729 0.7 0.714582
Target:  5'- aGCGGGGCC-ACg--GUCCGCgCCGc- -3'
miRNA:   3'- -UGCUCCGGuUGaaaUAGGCGgGGCuc -5'
6442 5' -55.2 NC_001847.1 + 122774 0.66 0.920953
Target:  5'- cCGAGGCCGcaGCcgccgaCGCuCCCGAGc -3'
miRNA:   3'- uGCUCCGGU--UGaaauagGCG-GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 130936 0.73 0.529833
Target:  5'- cCGAGGCCGGCgacGUUgGgCCCGAGg -3'
miRNA:   3'- uGCUCCGGUUGaaaUAGgCgGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 107028 0.73 0.539873
Target:  5'- aACGucGCCGGCcucgGUCCugGCCCCGAGg -3'
miRNA:   3'- -UGCucCGGUUGaaa-UAGG--CGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 585 0.72 0.620913
Target:  5'- gACGAGGCCGuCUUugUGUCCugcccgacgacgcGCCCCGuGu -3'
miRNA:   3'- -UGCUCCGGUuGAA--AUAGG-------------CGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 76781 0.72 0.62195
Target:  5'- uACGAGGCCGACguc--CCGCgCCUGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCG-GGGCUc -5'
6442 5' -55.2 NC_001847.1 + 123890 0.72 0.629212
Target:  5'- gGCGGGGcCCGACUguccccUUccccccucccccccGUCCGCCCgCGAGu -3'
miRNA:   3'- -UGCUCC-GGUUGA------AA--------------UAGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 41597 0.71 0.694265
Target:  5'- uCGAGGCCAGCguggcgUUGuUCUGCUCCGc- -3'
miRNA:   3'- uGCUCCGGUUGa-----AAU-AGGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 124438 0.71 0.673734
Target:  5'- gGCGcuuGGCCGGCgcgggCCGCgCCCGGGc -3'
miRNA:   3'- -UGCu--CCGGUUGaaauaGGCG-GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 103574 0.72 0.62195
Target:  5'- gGCGAGGCCGGC-----CCGCCgCCGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCGG-GGCUc -5'
6442 5' -55.2 NC_001847.1 + 35054 0.75 0.443166
Target:  5'- gACGGGGCUgcuGACgUUcgCCGCCUCGGGa -3'
miRNA:   3'- -UGCUCCGG---UUGaAAuaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 80035 0.71 0.684021
Target:  5'- -gGGGGUCGGCgucaucgCCGCCgCCGAGg -3'
miRNA:   3'- ugCUCCGGUUGaaaua--GGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 132930 0.74 0.479811
Target:  5'- cGCGGcgcuggcGGCCuACUg---CCGCCCCGAGg -3'
miRNA:   3'- -UGCU-------CCGGuUGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 3997 0.72 0.62195
Target:  5'- aGCGcGGCCAAgUUaacaGUCCGCCCCccGAGc -3'
miRNA:   3'- -UGCuCCGGUUgAAa---UAGGCGGGG--CUC- -5'
6442 5' -55.2 NC_001847.1 + 6960 0.71 0.694265
Target:  5'- cGCGGGGUCGcgGCggcgcuUCCGCCCgCGGGc -3'
miRNA:   3'- -UGCUCCGGU--UGaaau--AGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 112760 0.7 0.704455
Target:  5'- cCGcGGCCcgGGCgcu-UCUGCCCCGAGg -3'
miRNA:   3'- uGCuCCGG--UUGaaauAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 101060 0.74 0.500147
Target:  5'- cCGAGGCCGGCcccggggCCGCCgCGGGg -3'
miRNA:   3'- uGCUCCGGUUGaaaua--GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 131388 0.72 0.611584
Target:  5'- cGCGAgGGCCu-CUggGaCUGCCCCGAGa -3'
miRNA:   3'- -UGCU-CCGGuuGAaaUaGGCGGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.