miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6443 5' -57.1 NC_001847.1 + 101195 0.66 0.850142
Target:  5'- ---cGCGCUCGGguucuCCAGC---GCCUCGc -3'
miRNA:   3'- acuuCGCGAGCC-----GGUCGucaUGGAGC- -5'
6443 5' -57.1 NC_001847.1 + 124438 0.66 0.850142
Target:  5'- gGAGGCcCUCcuccgaGGCCGGCGGUGCg--- -3'
miRNA:   3'- aCUUCGcGAG------CCGGUCGUCAUGgagc -5'
6443 5' -57.1 NC_001847.1 + 42495 0.66 0.850142
Target:  5'- uUGAcccGGCGCUguugaaggaaaaCGGCCAGCu---CCUUGa -3'
miRNA:   3'- -ACU---UCGCGA------------GCCGGUCGucauGGAGC- -5'
6443 5' -57.1 NC_001847.1 + 27153 0.66 0.845327
Target:  5'- gGggGCGCagccgcggCGGCCAGCccaauaaugucggcgGgGUGCUUCa -3'
miRNA:   3'- aCuuCGCGa-------GCCGGUCG---------------U-CAUGGAGc -5'
6443 5' -57.1 NC_001847.1 + 79295 0.66 0.842077
Target:  5'- gUGAacGGCGC-CGGCUGGCAGcugcGCgUCa -3'
miRNA:   3'- -ACU--UCGCGaGCCGGUCGUCa---UGgAGc -5'
6443 5' -57.1 NC_001847.1 + 132149 0.66 0.842077
Target:  5'- gUGGAGCGCgcgCGGCUccAGCGcgcgGCCcCGg -3'
miRNA:   3'- -ACUUCGCGa--GCCGG--UCGUca--UGGaGC- -5'
6443 5' -57.1 NC_001847.1 + 37156 0.66 0.842077
Target:  5'- uUGggGCgGC-CGGgaAGCGGcACCUCGu -3'
miRNA:   3'- -ACuuCG-CGaGCCggUCGUCaUGGAGC- -5'
6443 5' -57.1 NC_001847.1 + 119523 0.66 0.842077
Target:  5'- aGggGCgGCggccgCGGCCGGCAG-GCUgggCa -3'
miRNA:   3'- aCuuCG-CGa----GCCGGUCGUCaUGGa--Gc -5'
6443 5' -57.1 NC_001847.1 + 29336 0.66 0.842077
Target:  5'- gUGGAGCGCgcgCGGCUccAGCGcgcgGCCcCGg -3'
miRNA:   3'- -ACUUCGCGa--GCCGG--UCGUca--UGGaGC- -5'
6443 5' -57.1 NC_001847.1 + 131042 0.66 0.842077
Target:  5'- ----uCGCUCauCCAGCAGUGCUUCGc -3'
miRNA:   3'- acuucGCGAGccGGUCGUCAUGGAGC- -5'
6443 5' -57.1 NC_001847.1 + 10294 0.66 0.83382
Target:  5'- ---cGCGCUC-GCCAGuCAGUGCggCGg -3'
miRNA:   3'- acuuCGCGAGcCGGUC-GUCAUGgaGC- -5'
6443 5' -57.1 NC_001847.1 + 95325 0.66 0.83382
Target:  5'- gGAAGCGCUCGGgCCcgccGCGG-ACgaCGc -3'
miRNA:   3'- aCUUCGCGAGCC-GGu---CGUCaUGgaGC- -5'
6443 5' -57.1 NC_001847.1 + 70802 0.66 0.83382
Target:  5'- aGAAGCGCguguaccaGGCCAcGCGgGUGCCc-- -3'
miRNA:   3'- aCUUCGCGag------CCGGU-CGU-CAUGGagc -5'
6443 5' -57.1 NC_001847.1 + 95010 0.66 0.83382
Target:  5'- cGAAGUguGCUCGGCCAagggacucgucGUGGcGCgCUCGg -3'
miRNA:   3'- aCUUCG--CGAGCCGGU-----------CGUCaUG-GAGC- -5'
6443 5' -57.1 NC_001847.1 + 37772 0.66 0.83382
Target:  5'- cGGAGgGCUCGcGCCuGaucauGUGCCUgCGg -3'
miRNA:   3'- aCUUCgCGAGC-CGGuCgu---CAUGGA-GC- -5'
6443 5' -57.1 NC_001847.1 + 15000 0.66 0.83382
Target:  5'- -cAAGCGCcccUCGGCC-GCGGUgggGCCgcgCGa -3'
miRNA:   3'- acUUCGCG---AGCCGGuCGUCA---UGGa--GC- -5'
6443 5' -57.1 NC_001847.1 + 64054 0.66 0.83382
Target:  5'- -uGGGCGCUggacgcccUGGCCGGCc--GCCUCGc -3'
miRNA:   3'- acUUCGCGA--------GCCGGUCGucaUGGAGC- -5'
6443 5' -57.1 NC_001847.1 + 763 0.66 0.83382
Target:  5'- cGAGGCcgGCcCGccGCCGGCGGcgccgGCCUCGu -3'
miRNA:   3'- aCUUCG--CGaGC--CGGUCGUCa----UGGAGC- -5'
6443 5' -57.1 NC_001847.1 + 7160 0.66 0.83382
Target:  5'- gUGucGCGCUCGcucGCCcgGGCGGUucauccGCUUCGg -3'
miRNA:   3'- -ACuuCGCGAGC---CGG--UCGUCA------UGGAGC- -5'
6443 5' -57.1 NC_001847.1 + 42010 0.66 0.83382
Target:  5'- gGggGCGCcggcagccCGGCCAGCuucGCC-CGg -3'
miRNA:   3'- aCuuCGCGa-------GCCGGUCGucaUGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.