miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 3' -56.3 NC_001847.1 + 95773 0.66 0.877976
Target:  5'- -----cGGGccgcucUGGCGCGGGgGGCGGCGc -3'
miRNA:   3'- acaucuCCC------ACUGCGCUUgCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 73746 0.66 0.877976
Target:  5'- ---cGAGGGcaguuccaaGCGcCGGGCGGCGGCGc -3'
miRNA:   3'- acauCUCCCac-------UGC-GCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 84460 0.66 0.870699
Target:  5'- --cGGGGGGUGgggaGCGgGGGgGGgGGCGg -3'
miRNA:   3'- acaUCUCCCAC----UGCgCUUgCCgUCGC- -5'
6445 3' -56.3 NC_001847.1 + 22331 0.66 0.870699
Target:  5'- --aAGAGGGUguuGACGuCGAugGcgaggcGCAGCGc -3'
miRNA:   3'- acaUCUCCCA---CUGC-GCUugC------CGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 113924 0.66 0.870699
Target:  5'- --gAGAGGaagcagcGCGCGGucGCGGCGGCGu -3'
miRNA:   3'- acaUCUCCcac----UGCGCU--UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 72319 0.66 0.870699
Target:  5'- cGUGGcGGuG-GACGCGGACGcGCuGCu -3'
miRNA:   3'- aCAUCuCC-CaCUGCGCUUGC-CGuCGc -5'
6445 3' -56.3 NC_001847.1 + 125144 0.66 0.870699
Target:  5'- --aAGAGGGUguuGACGuCGAugGcgaggcGCAGCGc -3'
miRNA:   3'- acaUCUCCCA---CUGC-GCUugC------CGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 6145 0.66 0.870699
Target:  5'- --cGGGGGGcucgGugGCGGugACGGCGcGCa -3'
miRNA:   3'- acaUCUCCCa---CugCGCU--UGCCGU-CGc -5'
6445 3' -56.3 NC_001847.1 + 89912 0.66 0.870699
Target:  5'- ---cGAGGuuGUGccGCGCGAggccgcgcucGCGGCGGCGc -3'
miRNA:   3'- acauCUCC--CAC--UGCGCU----------UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 36839 0.66 0.870699
Target:  5'- ---uGGGGGcuggcgGACGUGcgcuCGGCGGCGg -3'
miRNA:   3'- acauCUCCCa-----CUGCGCuu--GCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 96924 0.66 0.868474
Target:  5'- --gGGGGGGUG-CGCGuauAgcgggucgccgcuaGCGGCGGCa -3'
miRNA:   3'- acaUCUCCCACuGCGC---U--------------UGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 131760 0.66 0.866229
Target:  5'- uUGcGGAGGGcuuuGCGCGGcucggcgcgcggauuGCGGCGGCc -3'
miRNA:   3'- -ACaUCUCCCac--UGCGCU---------------UGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 32000 0.66 0.863206
Target:  5'- --gGGAGGG--ACGCGGGCGuGgAGCGc -3'
miRNA:   3'- acaUCUCCCacUGCGCUUGC-CgUCGC- -5'
6445 3' -56.3 NC_001847.1 + 49396 0.66 0.863206
Target:  5'- cGgccuGGGUGGCGCGGggcugACGGCcaAGCu -3'
miRNA:   3'- aCaucuCCCACUGCGCU-----UGCCG--UCGc -5'
6445 3' -56.3 NC_001847.1 + 5528 0.66 0.863206
Target:  5'- -cUAGGGcGGcGACGCucguGACGGCGGCc -3'
miRNA:   3'- acAUCUC-CCaCUGCGc---UUGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 3521 0.66 0.863206
Target:  5'- gUGUAcGGGccGUGGCcgacuacggccGCGAgcGCGGCGGCGg -3'
miRNA:   3'- -ACAUcUCC--CACUG-----------CGCU--UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 34089 0.66 0.863206
Target:  5'- cGUGGcGGccgccGUGGCuCGcGCGGCGGCGg -3'
miRNA:   3'- aCAUCuCC-----CACUGcGCuUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 134813 0.66 0.863206
Target:  5'- --gGGAGGG--ACGCGGGCGuGgAGCGc -3'
miRNA:   3'- acaUCUCCCacUGCGCUUGC-CgUCGC- -5'
6445 3' -56.3 NC_001847.1 + 102996 0.66 0.863206
Target:  5'- cGUcGcGGcGUG-CGCGGgcGCGGCGGCGc -3'
miRNA:   3'- aCAuCuCC-CACuGCGCU--UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 19812 0.66 0.855504
Target:  5'- gGUGGc-GGUGGCG-GGGCGGCAGa- -3'
miRNA:   3'- aCAUCucCCACUGCgCUUGCCGUCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.