miRNA display CGI


Results 21 - 40 of 524 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6447 5' -62.9 NC_001847.1 + 77190 0.66 0.588604
Target:  5'- cGCcGCGaCCGCGCUGCugcccgcgacGGAgccGCGGGc- -3'
miRNA:   3'- cCGuCGC-GGCGCGACG----------CCU---UGCCCcu -5'
6447 5' -62.9 NC_001847.1 + 32994 0.66 0.588604
Target:  5'- cGGCGG-GCCGCGCcgccGUGGucGCGcGGAg -3'
miRNA:   3'- -CCGUCgCGGCGCGa---CGCCu-UGCcCCU- -5'
6447 5' -62.9 NC_001847.1 + 120073 0.66 0.588604
Target:  5'- cGGCuccUGCCGagcCGC-GCGGGGCGGGaGAu -3'
miRNA:   3'- -CCGuc-GCGGC---GCGaCGCCUUGCCC-CU- -5'
6447 5' -62.9 NC_001847.1 + 1386 0.66 0.588604
Target:  5'- cGGCAGCacGCgcugccgguacuCGCGCgGCGGcACGGGc- -3'
miRNA:   3'- -CCGUCG--CG------------GCGCGaCGCCuUGCCCcu -5'
6447 5' -62.9 NC_001847.1 + 132976 0.66 0.588604
Target:  5'- aGGCGGCGCgGgCGCUGCGaGACcuGGu -3'
miRNA:   3'- -CCGUCGCGgC-GCGACGCcUUGccCCu -5'
6447 5' -62.9 NC_001847.1 + 68911 0.66 0.588604
Target:  5'- aGCGcCGCCGCGCUGagguuCGGcGCGGcGGc -3'
miRNA:   3'- cCGUcGCGGCGCGAC-----GCCuUGCC-CCu -5'
6447 5' -62.9 NC_001847.1 + 32567 0.66 0.588604
Target:  5'- aGGaUGGCGCCGCccgccGCUGCcccaGAGCuGGGAu -3'
miRNA:   3'- -CC-GUCGCGGCG-----CGACGc---CUUGcCCCU- -5'
6447 5' -62.9 NC_001847.1 + 74496 0.66 0.588604
Target:  5'- uGCAGCaGCCGCGcCUGCGccGCGcgcuGGAc -3'
miRNA:   3'- cCGUCG-CGGCGC-GACGCcuUGCc---CCU- -5'
6447 5' -62.9 NC_001847.1 + 134195 0.66 0.587628
Target:  5'- cGCAGCGUggagcggCGCGC-GCGGGccgagggcgGCGGuGGGa -3'
miRNA:   3'- cCGUCGCG-------GCGCGaCGCCU---------UGCC-CCU- -5'
6447 5' -62.9 NC_001847.1 + 116164 0.66 0.586652
Target:  5'- uGGCGGCcgcgggcgccgcgGCCGCGCUGgucgucgccgccaCGGAcgccGCGGcGGc -3'
miRNA:   3'- -CCGUCG-------------CGGCGCGAC-------------GCCU----UGCC-CCu -5'
6447 5' -62.9 NC_001847.1 + 34771 0.66 0.578857
Target:  5'- cGGCugcGCGCCGCgGCcGCGGcGCGcGGc- -3'
miRNA:   3'- -CCGu--CGCGGCG-CGaCGCCuUGC-CCcu -5'
6447 5' -62.9 NC_001847.1 + 80684 0.66 0.578857
Target:  5'- cGGCugcGCGCCG-GCgGCGGcuGCGGcuGGAa -3'
miRNA:   3'- -CCGu--CGCGGCgCGaCGCCu-UGCC--CCU- -5'
6447 5' -62.9 NC_001847.1 + 132216 0.66 0.578857
Target:  5'- aGGCG--GCCGCGCUgGCGGcGCGGa-- -3'
miRNA:   3'- -CCGUcgCGGCGCGA-CGCCuUGCCccu -5'
6447 5' -62.9 NC_001847.1 + 77331 0.66 0.578857
Target:  5'- cGCGGgGCacugCGCGCUGCuGGGCGGcGAc -3'
miRNA:   3'- cCGUCgCG----GCGCGACGcCUUGCCcCU- -5'
6447 5' -62.9 NC_001847.1 + 77304 0.66 0.578857
Target:  5'- gGGUacAGCGCCuucaugggGuUGCUGCGGAGgCGGGa- -3'
miRNA:   3'- -CCG--UCGCGG--------C-GCGACGCCUU-GCCCcu -5'
6447 5' -62.9 NC_001847.1 + 29403 0.66 0.578857
Target:  5'- aGGCG--GCCGCGCUgGCGGcGCGGa-- -3'
miRNA:   3'- -CCGUcgCGGCGCGA-CGCCuUGCCccu -5'
6447 5' -62.9 NC_001847.1 + 129373 0.66 0.578857
Target:  5'- gGGCuAGaCGCCGCGCUucGCGuuggcgcgccGGACGGcGGu -3'
miRNA:   3'- -CCG-UC-GCGGCGCGA--CGC----------CUUGCC-CCu -5'
6447 5' -62.9 NC_001847.1 + 58757 0.66 0.577884
Target:  5'- cGGCGGCgGCCGCgacggucgcugguGCUGCagcuacggcaGGAACGGa-- -3'
miRNA:   3'- -CCGUCG-CGGCG-------------CGACG----------CCUUGCCccu -5'
6447 5' -62.9 NC_001847.1 + 63180 0.66 0.577884
Target:  5'- cGGCcagcucGCGCCGCGCcacgacgUGCGGcGCGGc-- -3'
miRNA:   3'- -CCGu-----CGCGGCGCG-------ACGCCuUGCCccu -5'
6447 5' -62.9 NC_001847.1 + 117293 0.66 0.577884
Target:  5'- cGGCGGCgcuggcaacgcgaGCCGCGauggGCGaccuagcGGCGGGGGg -3'
miRNA:   3'- -CCGUCG-------------CGGCGCga--CGCc------UUGCCCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.