Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
645 | 3' | -49.1 | AC_000017.1 | + | 18527 | 0.7 | 0.67973 |
Target: 5'- -aCGGGUGGUGGGCag-GCCu--UGCu -3' miRNA: 3'- caGUCCACCACCUGcuaUGGuuuAUG- -5' |
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645 | 3' | -49.1 | AC_000017.1 | + | 33708 | 0.68 | 0.803386 |
Target: 5'- uUUAGGaUGGUGGugGAUggcGCCAu---- -3' miRNA: 3'- cAGUCC-ACCACCugCUA---UGGUuuaug -5' |
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645 | 3' | -49.1 | AC_000017.1 | + | 34327 | 0.67 | 0.861349 |
Target: 5'- uUCugcGGUGGUGGAUGuUAUCAGGgcaGCg -3' miRNA: 3'- cAGu--CCACCACCUGCuAUGGUUUa--UG- -5' |
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645 | 3' | -49.1 | AC_000017.1 | + | 9100 | 0.66 | 0.885085 |
Target: 5'- -gCAGGUGGUcaugcgcgcccGCGAUGCCGAAggggGCg -3' miRNA: 3'- caGUCCACCAcc---------UGCUAUGGUUUa---UG- -5' |
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645 | 3' | -49.1 | AC_000017.1 | + | 13971 | 0.66 | 0.886691 |
Target: 5'- -aCGGGUGGgcGGGCGcggGCCGGGcACa -3' miRNA: 3'- caGUCCACCa-CCUGCua-UGGUUUaUG- -5' |
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645 | 3' | -49.1 | AC_000017.1 | + | 21282 | 1.12 | 0.001576 |
Target: 5'- cGUCAGGUGGUGGACGAUACCAAAUACa -3' miRNA: 3'- -CAGUCCACCACCUGCUAUGGUUUAUG- -5' |
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645 | 3' | -49.1 | AC_000017.1 | + | 18271 | 0.72 | 0.595243 |
Target: 5'- --gGGGUGGUGGACcugGCCAAccaggcaGUGCa -3' miRNA: 3'- cagUCCACCACCUGcuaUGGUU-------UAUG- -5' |
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645 | 3' | -49.1 | AC_000017.1 | + | 15538 | 0.67 | 0.87009 |
Target: 5'- uUCcGGUGGUGGGCGccgagcuguUGCCc-GUGCa -3' miRNA: 3'- cAGuCCACCACCUGCu--------AUGGuuUAUG- -5' |
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645 | 3' | -49.1 | AC_000017.1 | + | 9132 | 0.66 | 0.901333 |
Target: 5'- --aGGGUGGUGG-CGGUguguucuGCCAcgaagaAGUACa -3' miRNA: 3'- cagUCCACCACCuGCUA-------UGGU------UUAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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