miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6453 5' -64.9 NC_001847.1 + 118546 0.66 0.532669
Target:  5'- -gCGUCUGaucgccggcaccccaCGcCGCCccgaCCCCGCUGUCCc -3'
miRNA:   3'- gaGCAGAC---------------GC-GCGG----GGGGCGGCAGGc -5'
6453 5' -64.9 NC_001847.1 + 120628 0.66 0.528949
Target:  5'- aCUCGUCgucgGCGUCUUUCGCCGagUCCGa -3'
miRNA:   3'- -GAGCAGacg-CGCGGGGGGCGGC--AGGC- -5'
6453 5' -64.9 NC_001847.1 + 126576 0.66 0.528949
Target:  5'- uUUGcCUGUGC-CCUCCCaCCGUCCc -3'
miRNA:   3'- gAGCaGACGCGcGGGGGGcGGCAGGc -5'
6453 5' -64.9 NC_001847.1 + 114947 0.66 0.528949
Target:  5'- -gCGgggCgGgGCGCCgCCCCGCgGUCUa -3'
miRNA:   3'- gaGCa--GaCgCGCGG-GGGGCGgCAGGc -5'
6453 5' -64.9 NC_001847.1 + 704 0.66 0.528949
Target:  5'- aCUCGUCUuuauugccgccGuCGCGCCCCCUcCC-UCCc -3'
miRNA:   3'- -GAGCAGA-----------C-GCGCGGGGGGcGGcAGGc -5'
6453 5' -64.9 NC_001847.1 + 23763 0.66 0.528949
Target:  5'- uUUGcCUGUGC-CCUCCCaCCGUCCc -3'
miRNA:   3'- gAGCaGACGCGcGGGGGGcGGCAGGc -5'
6453 5' -64.9 NC_001847.1 + 67931 0.66 0.528949
Target:  5'- uUCGaCcGCGCGCCCgCCGCuCGgcaCGg -3'
miRNA:   3'- gAGCaGaCGCGCGGGgGGCG-GCag-GC- -5'
6453 5' -64.9 NC_001847.1 + 100709 0.66 0.528949
Target:  5'- cCUCGUCcGCG-GCCCgaaguacuucuUCCGCCGcCCc -3'
miRNA:   3'- -GAGCAGaCGCgCGGG-----------GGGCGGCaGGc -5'
6453 5' -64.9 NC_001847.1 + 103517 0.66 0.528949
Target:  5'- aCUCGUCUuuauugccgccGuCGCGCCCCCUcCC-UCCc -3'
miRNA:   3'- -GAGCAGA-----------C-GCGCGGGGGGcGGcAGGc -5'
6453 5' -64.9 NC_001847.1 + 92419 0.66 0.528021
Target:  5'- -cCGcCcGCGCGgCCgCCCGCCGcgccaaaUCCGg -3'
miRNA:   3'- gaGCaGaCGCGCgGG-GGGCGGC-------AGGC- -5'
6453 5' -64.9 NC_001847.1 + 22804 0.66 0.528021
Target:  5'- gCUCGUagaUGCGggccggcggcggcCGCUCCCCGCCGa--- -3'
miRNA:   3'- -GAGCAg--ACGC-------------GCGGGGGGCGGCaggc -5'
6453 5' -64.9 NC_001847.1 + 4417 0.66 0.519695
Target:  5'- -gCGUCcucCGCGCCCUCCGCCc-CCu -3'
miRNA:   3'- gaGCAGac-GCGCGGGGGGCGGcaGGc -5'
6453 5' -64.9 NC_001847.1 + 89985 0.66 0.519695
Target:  5'- -gCGgugCUGCGCGCCgcggggcugcaCCCCGCagaaGgcgCCGa -3'
miRNA:   3'- gaGCa--GACGCGCGG-----------GGGGCGg---Ca--GGC- -5'
6453 5' -64.9 NC_001847.1 + 120916 0.66 0.519695
Target:  5'- -gCGUUUGCccucaccaCGCCCCCgGCCGgCCu -3'
miRNA:   3'- gaGCAGACGc-------GCGGGGGgCGGCaGGc -5'
6453 5' -64.9 NC_001847.1 + 121126 0.66 0.519695
Target:  5'- -gCG-CUGCGcCGCCgCCUGCUG-CCGu -3'
miRNA:   3'- gaGCaGACGC-GCGGgGGGCGGCaGGC- -5'
6453 5' -64.9 NC_001847.1 + 58887 0.66 0.519695
Target:  5'- uCUCGUUggcgagGUGCGCCUCCaUGgCGUCgGg -3'
miRNA:   3'- -GAGCAGa-----CGCGCGGGGG-GCgGCAGgC- -5'
6453 5' -64.9 NC_001847.1 + 86079 0.66 0.519695
Target:  5'- gUCGgCUGC-CGCCgCCCGCgG-CCGu -3'
miRNA:   3'- gAGCaGACGcGCGGgGGGCGgCaGGC- -5'
6453 5' -64.9 NC_001847.1 + 107230 0.66 0.519695
Target:  5'- -gCGUCcucCGCGCCCUCCGCCc-CCu -3'
miRNA:   3'- gaGCAGac-GCGCGGGGGGCGGcaGGc -5'
6453 5' -64.9 NC_001847.1 + 75651 0.66 0.519695
Target:  5'- cCUCG---GCGCaCCCCCUGCCGgCUGg -3'
miRNA:   3'- -GAGCagaCGCGcGGGGGGCGGCaGGC- -5'
6453 5' -64.9 NC_001847.1 + 58714 0.66 0.519695
Target:  5'- --aGUCcgcGCGCGCgCUCCCGCCG-CgGg -3'
miRNA:   3'- gagCAGa--CGCGCG-GGGGGCGGCaGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.