miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6454 5' -58.6 NC_001847.1 + 23881 0.66 0.784909
Target:  5'- cCGGCGCCGCCUccGaCCCGgcgccGcCUCCg- -3'
miRNA:   3'- -GCUGCGGCGGA--CaGGGUa----CuGAGGaa -5'
6454 5' -58.6 NC_001847.1 + 126694 0.66 0.784909
Target:  5'- cCGGCGCCGCCUccGaCCCGgcgccGcCUCCg- -3'
miRNA:   3'- -GCUGCGGCGGA--CaGGGUa----CuGAGGaa -5'
6454 5' -58.6 NC_001847.1 + 63546 0.66 0.779386
Target:  5'- uGGCGCCGCCUGggCCggcgccgggcggcacUGUGAC-CCUc -3'
miRNA:   3'- gCUGCGGCGGACa-GG---------------GUACUGaGGAa -5'
6454 5' -58.6 NC_001847.1 + 121223 0.66 0.775678
Target:  5'- uGACGCCGUCgcgGgccUCCCGgaACUCCa- -3'
miRNA:   3'- gCUGCGGCGGa--C---AGGGUacUGAGGaa -5'
6454 5' -58.6 NC_001847.1 + 79813 0.66 0.766318
Target:  5'- --cCGCCGCgaGcggCCAUGACUCCUc -3'
miRNA:   3'- gcuGCGGCGgaCag-GGUACUGAGGAa -5'
6454 5' -58.6 NC_001847.1 + 125423 0.66 0.75684
Target:  5'- cCGGCGCCGCCggagGaCCCgcgcGUGGCUggCCg- -3'
miRNA:   3'- -GCUGCGGCGGa---CaGGG----UACUGA--GGaa -5'
6454 5' -58.6 NC_001847.1 + 15897 0.66 0.75684
Target:  5'- gGGCGCCGCCauaaucaGUCCCA--GCUCg-- -3'
miRNA:   3'- gCUGCGGCGGa------CAGGGUacUGAGgaa -5'
6454 5' -58.6 NC_001847.1 + 57067 0.66 0.737566
Target:  5'- ---gGCCGCCg--CCCG-GACUCCUg -3'
miRNA:   3'- gcugCGGCGGacaGGGUaCUGAGGAa -5'
6454 5' -58.6 NC_001847.1 + 121131 0.66 0.737565
Target:  5'- gCGcCGCCGCCUGcUgCCGUG-CUCUc- -3'
miRNA:   3'- -GCuGCGGCGGAC-AgGGUACuGAGGaa -5'
6454 5' -58.6 NC_001847.1 + 107002 0.67 0.727787
Target:  5'- cCGGCGUCGCUgcaGUCCUcgGGC-CCa- -3'
miRNA:   3'- -GCUGCGGCGGa--CAGGGuaCUGaGGaa -5'
6454 5' -58.6 NC_001847.1 + 4189 0.67 0.727787
Target:  5'- cCGGCGUCGCUgcaGUCCUcgGGC-CCa- -3'
miRNA:   3'- -GCUGCGGCGGa--CAGGGuaCUGaGGaa -5'
6454 5' -58.6 NC_001847.1 + 71730 0.67 0.727787
Target:  5'- cCGGCGCCGCgUGcgcUCCCGUGcgagGCUgCg- -3'
miRNA:   3'- -GCUGCGGCGgAC---AGGGUAC----UGAgGaa -5'
6454 5' -58.6 NC_001847.1 + 50384 0.67 0.717926
Target:  5'- aCGGCGCCGCCgccgGcUUCCAccGCUUCUa -3'
miRNA:   3'- -GCUGCGGCGGa---C-AGGGUacUGAGGAa -5'
6454 5' -58.6 NC_001847.1 + 130484 0.67 0.717926
Target:  5'- aGACGCCGCaagcaacGUCgggCgGUGGCUCCUg -3'
miRNA:   3'- gCUGCGGCGga-----CAG---GgUACUGAGGAa -5'
6454 5' -58.6 NC_001847.1 + 54124 0.67 0.717926
Target:  5'- gCGGCGgCGUCg--CCCAUGcGCUCCUc -3'
miRNA:   3'- -GCUGCgGCGGacaGGGUAC-UGAGGAa -5'
6454 5' -58.6 NC_001847.1 + 39787 0.67 0.687942
Target:  5'- -uGCGCCGCCUGgCCCc--GCUCCc- -3'
miRNA:   3'- gcUGCGGCGGACaGGGuacUGAGGaa -5'
6454 5' -58.6 NC_001847.1 + 118413 0.67 0.687942
Target:  5'- uCGugGCCGUCgccugcgGUCUCGgcgccguggGGCUCCUg -3'
miRNA:   3'- -GCugCGGCGGa------CAGGGUa--------CUGAGGAa -5'
6454 5' -58.6 NC_001847.1 + 30539 0.68 0.647359
Target:  5'- gCGACGUCGCCgagcucGUCgCGcGGCUCCg- -3'
miRNA:   3'- -GCUGCGGCGGa-----CAGgGUaCUGAGGaa -5'
6454 5' -58.6 NC_001847.1 + 124596 0.69 0.596415
Target:  5'- cCGGCGCCgGCCgggcgcggGUCCCcgGGC-CCg- -3'
miRNA:   3'- -GCUGCGG-CGGa-------CAGGGuaCUGaGGaa -5'
6454 5' -58.6 NC_001847.1 + 97876 0.69 0.596415
Target:  5'- uCGACGCCGCCccggCCGUGcuGCUCCa- -3'
miRNA:   3'- -GCUGCGGCGGacagGGUAC--UGAGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.