miRNA display CGI


Results 21 - 40 of 841 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 3' -67.8 NC_001847.1 + 2142 0.66 0.38396
Target:  5'- nCGaaGGCGaGCgCCGGgCGcCAGGGCUc -3'
miRNA:   3'- gGCg-CCGC-CGgGGCCgGCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 2207 0.68 0.293432
Target:  5'- cUCGgGGCGGCaguaGGCCGcCAGcGCCg -3'
miRNA:   3'- -GGCgCCGCCGggg-CCGGCaGUCcCGG- -5'
6455 3' -67.8 NC_001847.1 + 2274 0.73 0.132221
Target:  5'- aCGCGGCGgaagccGCCgUCGGCgG-CGGGGCCg -3'
miRNA:   3'- gGCGCCGC------CGG-GGCCGgCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 2340 0.74 0.11647
Target:  5'- -aGCGGCGGCucccgccgcgccggCCCGGCCGcgUCGGcGGCg -3'
miRNA:   3'- ggCGCCGCCG--------------GGGCCGGC--AGUC-CCGg -5'
6455 3' -67.8 NC_001847.1 + 2421 0.76 0.091863
Target:  5'- cCCGaGG-GGCCCCccgcggcGGCCGgCAGGGCCg -3'
miRNA:   3'- -GGCgCCgCCGGGG-------CCGGCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 2475 0.7 0.220447
Target:  5'- -gGCGGCGGCgccCCCGccGCCGUgugaagacgucgCgAGGGCCg -3'
miRNA:   3'- ggCGCCGCCG---GGGC--CGGCA------------G-UCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 2537 0.7 0.235786
Target:  5'- aCC-CGGCGGCgcuCCCGccGCCGggcCGGGGCg -3'
miRNA:   3'- -GGcGCCGCCG---GGGC--CGGCa--GUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 2586 0.66 0.38396
Target:  5'- gCGCGGCcGCCgCGGCCG-CAcGcGaGCCc -3'
miRNA:   3'- gGCGCCGcCGGgGCCGGCaGU-C-C-CGG- -5'
6455 3' -67.8 NC_001847.1 + 2701 0.72 0.167383
Target:  5'- cCCGCGGC-GCCCCGGCCcUCAuGuCCu -3'
miRNA:   3'- -GGCGCCGcCGGGGCCGGcAGUcCcGG- -5'
6455 3' -67.8 NC_001847.1 + 2758 0.76 0.078932
Target:  5'- gCGCGGCGGCgCCGgcgccggcgcccccGCCGgcggccucCAGGGCCg -3'
miRNA:   3'- gGCGCCGCCGgGGC--------------CGGCa-------GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 2854 0.68 0.299766
Target:  5'- gCGCGcGCGccagcGCCCaGGCCGacgCGcGGGCCg -3'
miRNA:   3'- gGCGC-CGC-----CGGGgCCGGCa--GU-CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 2956 0.79 0.048449
Target:  5'- gCGCGGCGGCCgCCucggcgcgcaGcGCCGcCGGGGCCg -3'
miRNA:   3'- gGCGCCGCCGG-GG----------C-CGGCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 3098 0.72 0.16352
Target:  5'- gCCGCGGCcggcaGGCCgCGGcCCGcCGcGGCCg -3'
miRNA:   3'- -GGCGCCG-----CCGGgGCC-GGCaGUcCCGG- -5'
6455 3' -67.8 NC_001847.1 + 3144 0.73 0.145386
Target:  5'- gCC-CGGCGGCgCCGGCgGcgCGgcGGGCCg -3'
miRNA:   3'- -GGcGCCGCCGgGGCCGgCa-GU--CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 3312 0.66 0.391648
Target:  5'- gCGCGGCgcgGGCgCCGcuGCCGcCGGcGCCg -3'
miRNA:   3'- gGCGCCG---CCGgGGC--CGGCaGUCcCGG- -5'
6455 3' -67.8 NC_001847.1 + 3417 0.72 0.175354
Target:  5'- -aGCGGCGGCUCaUGGCCacgCAGGccGCCa -3'
miRNA:   3'- ggCGCCGCCGGG-GCCGGca-GUCC--CGG- -5'
6455 3' -67.8 NC_001847.1 + 3552 0.7 0.234213
Target:  5'- gCGCGGCGGCggCGuaguugaggguguaGCCGcCGGGGCUg -3'
miRNA:   3'- gGCGCCGCCGggGC--------------CGGCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 3716 0.69 0.27506
Target:  5'- cCCGCGGCcGCCgCguagcgcgCGGCCGccucgcggaucUCGGGGCa -3'
miRNA:   3'- -GGCGCCGcCGG-G--------GCCGGC-----------AGUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 3815 0.66 0.376373
Target:  5'- -gGCGGCGGCggCGcGCUG-CcGGGCCa -3'
miRNA:   3'- ggCGCCGCCGggGC-CGGCaGuCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 3876 0.67 0.337878
Target:  5'- gCgGCGGCGGCCCgucgcgcggcgccgCGGCguagccagCG-CGGGcGCCg -3'
miRNA:   3'- -GgCGCCGCCGGG--------------GCCG--------GCaGUCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.