miRNA display CGI


Results 21 - 40 of 841 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 3' -67.8 NC_001847.1 + 11663 0.87 0.013858
Target:  5'- uUGCGGCGGCCCCagccgagcccgcggcGGCCGUCGccGGGCCa -3'
miRNA:   3'- gGCGCCGCCGGGG---------------CCGGCAGU--CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 124429 0.76 0.081491
Target:  5'- cUCGCuGGCGGCgCuuGGCCGgCGcGGGCCg -3'
miRNA:   3'- -GGCG-CCGCCG-GggCCGGCaGU-CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 103690 0.76 0.081491
Target:  5'- gCGCGGCGGCggCCCGcGCCG---GGGCCg -3'
miRNA:   3'- gGCGCCGCCG--GGGC-CGGCaguCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 52665 0.77 0.068595
Target:  5'- aCGCcuucGGCGGCCCCguGGCCGgggCcGGGCCc -3'
miRNA:   3'- gGCG----CCGCCGGGG--CCGGCa--GuCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 18982 0.79 0.048328
Target:  5'- gCCGCGGC-GCCCgCGGCCGcCAgcgccucGGGCCg -3'
miRNA:   3'- -GGCGCCGcCGGG-GCCGGCaGU-------CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 92200 0.76 0.083513
Target:  5'- cCCGCGcGCGGCgUCGGCCGcuUgGGcGGCCa -3'
miRNA:   3'- -GGCGC-CGCCGgGGCCGGC--AgUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 58314 0.76 0.083513
Target:  5'- gCGCGGUGGCUCCGGCaccgGUCucuGuGGCCc -3'
miRNA:   3'- gGCGCCGCCGGGGCCGg---CAGu--C-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 132709 0.8 0.040667
Target:  5'- -gGCGGCGGCCcugCCGGCCGcCgcgGGGGCCc -3'
miRNA:   3'- ggCGCCGCCGG---GGCCGGCaG---UCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 132852 0.77 0.075703
Target:  5'- gCCGCccGGCGGCCCCGccGCCGaCGGcGGCUu -3'
miRNA:   3'- -GGCG--CCGCCGGGGC--CGGCaGUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 16054 0.77 0.072065
Target:  5'- cCCGCGGCGGCCgCGGCgCcUCugcuGGGCg -3'
miRNA:   3'- -GGCGCCGCCGGgGCCG-GcAGu---CCCGg -5'
6455 3' -67.8 NC_001847.1 + 15127 0.81 0.035871
Target:  5'- aCgGCGGCGGUgCUGGCCuugcuacugcgcGUCGGGGCCg -3'
miRNA:   3'- -GgCGCCGCCGgGGCCGG------------CAGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 6683 0.85 0.020073
Target:  5'- gCCGCGGCGGCCggCCGGgCGcgcgcgCAGGGCCg -3'
miRNA:   3'- -GGCGCCGCCGG--GGCCgGCa-----GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 68791 0.75 0.094129
Target:  5'- gCCGCGGCGGCCgcgcgagCgGGCCGaCGGGGg- -3'
miRNA:   3'- -GGCGCCGCCGG-------GgCCGGCaGUCCCgg -5'
6455 3' -67.8 NC_001847.1 + 33659 0.76 0.089869
Target:  5'- gCGCGcGUGGCCgCGGCCcgcgCGGGGCUa -3'
miRNA:   3'- gGCGC-CGCCGGgGCCGGca--GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 101147 0.76 0.081491
Target:  5'- gCGCGGgGGCUggGGCCGgggcCGGGGCCg -3'
miRNA:   3'- gGCGCCgCCGGggCCGGCa---GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 120986 0.79 0.054878
Target:  5'- gCGCGGCcGCCCCGGCCGccgcugcgCAGccGGCCg -3'
miRNA:   3'- gGCGCCGcCGGGGCCGGCa-------GUC--CCGG- -5'
6455 3' -67.8 NC_001847.1 + 37571 0.79 0.050928
Target:  5'- aCGCGGCGGCgCUGGCCGcugcggcugCGGcGGCCg -3'
miRNA:   3'- gGCGCCGCCGgGGCCGGCa--------GUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 11581 0.85 0.018793
Target:  5'- cUCGCGGCGGCCCCGGCCcaagccccguucgCAGcGGCCu -3'
miRNA:   3'- -GGCGCCGCCGGGGCCGGca-----------GUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 76361 0.77 0.072065
Target:  5'- gCCGgGGCGGaCCCCGGUCGccucuUCAcGGCCu -3'
miRNA:   3'- -GGCgCCGCC-GGGGCCGGC-----AGUcCCGG- -5'
6455 3' -67.8 NC_001847.1 + 133479 0.77 0.075703
Target:  5'- gCCGCGcGaCGG-CCCGGCCGUC-GGGCa -3'
miRNA:   3'- -GGCGC-C-GCCgGGGCCGGCAGuCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.