miRNA display CGI


Results 41 - 60 of 841 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 3' -67.8 NC_001847.1 + 49188 0.77 0.073862
Target:  5'- aCGCGGCGGCCaagaCGGUagcccucgCGcCGGGGCCc -3'
miRNA:   3'- gGCGCCGCCGGg---GCCG--------GCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 89292 0.77 0.075703
Target:  5'- gCCGCGGCcgaGGCCUCGGCCGUgccgccCAGcgaguGGCCc -3'
miRNA:   3'- -GGCGCCG---CCGGGGCCGGCA------GUC-----CCGG- -5'
6455 3' -67.8 NC_001847.1 + 133479 0.77 0.075703
Target:  5'- gCCGCGcGaCGG-CCCGGCCGUC-GGGCa -3'
miRNA:   3'- -GGCGC-C-GCCgGGGCCGGCAGuCCCGg -5'
6455 3' -67.8 NC_001847.1 + 132852 0.77 0.075703
Target:  5'- gCCGCccGGCGGCCCCGccGCCGaCGGcGGCUu -3'
miRNA:   3'- -GGCG--CCGCCGGGGC--CGGCaGUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 30666 0.77 0.075703
Target:  5'- gCCGCGcGaCGG-CCCGGCCGUC-GGGCa -3'
miRNA:   3'- -GGCGC-C-GCCgGGGCCGGCAGuCCCGg -5'
6455 3' -67.8 NC_001847.1 + 30039 0.77 0.075703
Target:  5'- gCCGCccGGCGGCCCCGccGCCGaCGGcGGCUu -3'
miRNA:   3'- -GGCG--CCGCCGGGGC--CGGCaGUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 102885 0.77 0.077587
Target:  5'- gCGCGGCGGgCCCGGgcCCGcUCuGGGCUc -3'
miRNA:   3'- gGCGCCGCCgGGGCC--GGC-AGuCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 101013 0.77 0.077587
Target:  5'- gCCGCGGCGGCCaCCGcggcaggcGCCG-CAGGcuccGCCg -3'
miRNA:   3'- -GGCGCCGCCGG-GGC--------CGGCaGUCC----CGG- -5'
6455 3' -67.8 NC_001847.1 + 72 0.77 0.077587
Target:  5'- gCGCGGCGGgCCCGGgcCCGcUCuGGGCUc -3'
miRNA:   3'- gGCGCCGCCgGGGCC--GGC-AGuCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 2758 0.76 0.078932
Target:  5'- gCGCGGCGGCgCCGgcgccggcgcccccGCCGgcggccucCAGGGCCg -3'
miRNA:   3'- gGCGCCGCCGgGGC--------------CGGCa-------GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 105571 0.76 0.078932
Target:  5'- gCGCGGCGGCgCCGgcgccggcgcccccGCCGgcggccucCAGGGCCg -3'
miRNA:   3'- gGCGCCGCCGgGGC--------------CGGCa-------GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 877 0.76 0.081491
Target:  5'- gCGCGGCGGCggCCCGcGCCG---GGGCCg -3'
miRNA:   3'- gGCGCCGCCG--GGGC-CGGCaguCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 21616 0.76 0.081491
Target:  5'- cUCGCuGGCGGCgCuuGGCCGgCGcGGGCCg -3'
miRNA:   3'- -GGCG-CCGCCG-GggCCGGCaGU-CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 101147 0.76 0.081491
Target:  5'- gCGCGGgGGCUggGGCCGgggcCGGGGCCg -3'
miRNA:   3'- gGCGCCgCCGGggCCGGCa---GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 124429 0.76 0.081491
Target:  5'- cUCGCuGGCGGCgCuuGGCCGgCGcGGGCCg -3'
miRNA:   3'- -GGCG-CCGCCG-GggCCGGCaGU-CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 103690 0.76 0.081491
Target:  5'- gCGCGGCGGCggCCCGcGCCG---GGGCCg -3'
miRNA:   3'- gGCGCCGCCG--GGGC-CGGCaguCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 57931 0.76 0.083513
Target:  5'- gCC-CGGCGGCCCgCGGCucCGUCGcGGGCa -3'
miRNA:   3'- -GGcGCCGCCGGG-GCCG--GCAGU-CCCGg -5'
6455 3' -67.8 NC_001847.1 + 28603 0.76 0.083513
Target:  5'- uCCGCgaGGCGGCCgCgcgcuacgcggCGGCCG-CGGGGCCc -3'
miRNA:   3'- -GGCG--CCGCCGG-G-----------GCCGGCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 21362 0.76 0.083513
Target:  5'- gCCGuCGGCGGCUCgGGCCGcCucGGGCg -3'
miRNA:   3'- -GGC-GCCGCCGGGgCCGGCaGu-CCCGg -5'
6455 3' -67.8 NC_001847.1 + 58314 0.76 0.083513
Target:  5'- gCGCGGUGGCUCCGGCaccgGUCucuGuGGCCc -3'
miRNA:   3'- gGCGCCGCCGGGGCCGg---CAGu--C-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.