miRNA display CGI


Results 41 - 60 of 841 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 3' -67.8 NC_001847.1 + 95373 0.66 0.407322
Target:  5'- -gGCGGCGGa-CCGcGCCGcCGGcucugaGGCCg -3'
miRNA:   3'- ggCGCCGCCggGGC-CGGCaGUC------CCGG- -5'
6455 3' -67.8 NC_001847.1 + 122123 0.66 0.407322
Target:  5'- aCGCuGCaGGUCgcgaCGGCCGgcgcgCAGGGCg -3'
miRNA:   3'- gGCGcCG-CCGGg---GCCGGCa----GUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 123244 0.66 0.407322
Target:  5'- gCCGCGccagcGCGGaCCCCGGCCGcacCAGauuacaccguGGUa -3'
miRNA:   3'- -GGCGC-----CGCC-GGGGCCGGCa--GUC----------CCGg -5'
6455 3' -67.8 NC_001847.1 + 11182 0.66 0.407322
Target:  5'- nUGgGGCuGCCgCUGGuCCGcgCGGGGCUg -3'
miRNA:   3'- gGCgCCGcCGG-GGCC-GGCa-GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 36051 0.66 0.407322
Target:  5'- aCGC-GCGGCUgCCGGCCGcguucaCAGGcGCg -3'
miRNA:   3'- gGCGcCGCCGG-GGCCGGCa-----GUCC-CGg -5'
6455 3' -67.8 NC_001847.1 + 82974 0.66 0.407322
Target:  5'- uCUGUGGUGGCUgcuCCGGCgGagCcuGGCCa -3'
miRNA:   3'- -GGCGCCGCCGG---GGCCGgCa-GucCCGG- -5'
6455 3' -67.8 NC_001847.1 + 46911 0.66 0.407322
Target:  5'- gCCGCGcCGGCCUCGGCUccggCgAGGcGCUu -3'
miRNA:   3'- -GGCGCcGCCGGGGCCGGca--G-UCC-CGG- -5'
6455 3' -67.8 NC_001847.1 + 81236 0.66 0.407322
Target:  5'- -aGCGGCGGCg--GGCCaggCuGGGCCu -3'
miRNA:   3'- ggCGCCGCCGgggCCGGca-GuCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 19038 0.66 0.407321
Target:  5'- cCCGcCGGCaGGCCCgGcGUCGUCAucGUCg -3'
miRNA:   3'- -GGC-GCCG-CCGGGgC-CGGCAGUccCGG- -5'
6455 3' -67.8 NC_001847.1 + 81781 0.66 0.407321
Target:  5'- cUCGCGGU-GCCCgCGGCCGcCAGcaGCg -3'
miRNA:   3'- -GGCGCCGcCGGG-GCCGGCaGUCc-CGg -5'
6455 3' -67.8 NC_001847.1 + 101516 0.66 0.407321
Target:  5'- cUCGCGGuCaGCCgCCGcGcCCGUCgccAGGGCg -3'
miRNA:   3'- -GGCGCC-GcCGG-GGC-C-GGCAG---UCCCGg -5'
6455 3' -67.8 NC_001847.1 + 109398 0.66 0.406529
Target:  5'- cUCGCcGCGGCCCUGccucccuacuuuuGCCuGUgugaAGGGCCc -3'
miRNA:   3'- -GGCGcCGCCGGGGC-------------CGG-CAg---UCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 6585 0.66 0.406528
Target:  5'- cUCGCcGCGGCCCUGccucccuacuuuuGCCuGUgugaAGGGCCc -3'
miRNA:   3'- -GGCGcCGCCGGGGC-------------CGG-CAg---UCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 6345 0.66 0.399436
Target:  5'- gCCcCGGCGGCaaCCGcGCCG-CGGGcguaGCCg -3'
miRNA:   3'- -GGcGCCGCCGg-GGC-CGGCaGUCC----CGG- -5'
6455 3' -67.8 NC_001847.1 + 64733 0.66 0.399436
Target:  5'- gCCGCugacauucCGGacaCCCCGGCCGUacagucgcaccCGGGGCUc -3'
miRNA:   3'- -GGCGcc------GCC---GGGGCCGGCA-----------GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 106856 0.66 0.399436
Target:  5'- nCGCuuuGGUucuGGUCCCGGCCccaGUCccGGCCu -3'
miRNA:   3'- gGCG---CCG---CCGGGGCCGG---CAGucCCGG- -5'
6455 3' -67.8 NC_001847.1 + 50085 0.66 0.399436
Target:  5'- cCCGgGcGCGGCCaaGGCUGcCGcgccGGGCg -3'
miRNA:   3'- -GGCgC-CGCCGGggCCGGCaGU----CCCGg -5'
6455 3' -67.8 NC_001847.1 + 97669 0.66 0.399436
Target:  5'- gCCGCugccaGGcCGGgCCCGGCCaacgCAGGcCCg -3'
miRNA:   3'- -GGCG-----CC-GCCgGGGCCGGca--GUCCcGG- -5'
6455 3' -67.8 NC_001847.1 + 52380 0.66 0.399436
Target:  5'- gCGCGcUGGCgCagaCGGCCGUCuacGGcGCCg -3'
miRNA:   3'- gGCGCcGCCG-Gg--GCCGGCAGu--CC-CGG- -5'
6455 3' -67.8 NC_001847.1 + 78292 0.66 0.399436
Target:  5'- uCUGCgaGGCGGUgCUCGGgCGgCuGGGCCg -3'
miRNA:   3'- -GGCG--CCGCCG-GGGCCgGCaGuCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.