miRNA display CGI


Results 1 - 20 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 5' -54.3 NC_001847.1 + 984 0.66 0.934582
Target:  5'- gCGGGGCU----UCCgccgCGgcGGCGGCa -3'
miRNA:   3'- aGCUCCGAcuucAGGa---GUuuCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 1944 0.68 0.864069
Target:  5'- cUCGGgccgccGGCgcucGUCCUCGccGGGCGGCg -3'
miRNA:   3'- -AGCU------CCGacuuCAGGAGUu-UCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 2274 0.66 0.929395
Target:  5'- aCGcGGCgGAAG-CCgcCGucGGCGGCg -3'
miRNA:   3'- aGCuCCGaCUUCaGGa-GUuuCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 3451 0.7 0.767856
Target:  5'- gUCGAGGCgGAAGUCgaCAgcAAGcGCGcGCc -3'
miRNA:   3'- -AGCUCCGaCUUCAGgaGU--UUC-CGC-CG- -5'
6455 5' -54.3 NC_001847.1 + 3584 0.68 0.856261
Target:  5'- cCGGGGCUGAGGaagucggCgUCGuu-GCGGCa -3'
miRNA:   3'- aGCUCCGACUUCa------GgAGUuucCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 3754 0.67 0.899734
Target:  5'- cUCGGGGC---AGUCC-CAGAGGCccucGCg -3'
miRNA:   3'- -AGCUCCGacuUCAGGaGUUUCCGc---CG- -5'
6455 5' -54.3 NC_001847.1 + 5868 0.68 0.879026
Target:  5'- cUCGAGGU---GGUCCagCGcugcgcgcAGGGCGGCc -3'
miRNA:   3'- -AGCUCCGacuUCAGGa-GU--------UUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 6419 0.7 0.748371
Target:  5'- gUCGGGGaaGGcgAGUCC-CGAgggguuAGGCGGCg -3'
miRNA:   3'- -AGCUCCgaCU--UCAGGaGUU------UCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 7177 0.66 0.929395
Target:  5'- gUCGGuGGCguacaggauuUGGAgcgcGUCCUCGAGcGCGGCu -3'
miRNA:   3'- -AGCU-CCG----------ACUU----CAGGAGUUUcCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 8118 0.67 0.918272
Target:  5'- gCGcAGGCgcGggGcCC-CAGGGGCGGg -3'
miRNA:   3'- aGC-UCCGa-CuuCaGGaGUUUCCGCCg -5'
6455 5' -54.3 NC_001847.1 + 8436 0.69 0.805241
Target:  5'- gUCG-GGUcGGAGgcggcgCCgggUCGGAGGCGGCg -3'
miRNA:   3'- -AGCuCCGaCUUCa-----GG---AGUUUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 11212 0.74 0.522378
Target:  5'- gUCGAGGUUGAAGUggggCCUCu--GGUGGa -3'
miRNA:   3'- -AGCUCCGACUUCA----GGAGuuuCCGCCg -5'
6455 5' -54.3 NC_001847.1 + 12374 0.67 0.906158
Target:  5'- gUCGGcGGCUGcGG-CCUCGGGGcGCGuGUg -3'
miRNA:   3'- -AGCU-CCGACuUCaGGAGUUUC-CGC-CG- -5'
6455 5' -54.3 NC_001847.1 + 12597 0.7 0.766893
Target:  5'- aCGAgcGGCUGucGgaagggcccccgcUCCUCAacaugGAGGCGGCc -3'
miRNA:   3'- aGCU--CCGACuuC-------------AGGAGU-----UUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 13315 0.75 0.473321
Target:  5'- gUCGAGGCaGAcgGGcUCCggCAcGGGCGGCg -3'
miRNA:   3'- -AGCUCCGaCU--UC-AGGa-GUuUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 15092 0.67 0.906158
Target:  5'- cCGGGGCUaGGAG-CaaaGGGGGCGGUc -3'
miRNA:   3'- aGCUCCGA-CUUCaGgagUUUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 15363 0.73 0.614809
Target:  5'- uUCGAGGCUcGGccAG-CCUUcgGGGCGGUc -3'
miRNA:   3'- -AGCUCCGA-CU--UCaGGAGuuUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 15396 0.66 0.944215
Target:  5'- gUCGGGGCUGggG-CC----GGGUuucGGCu -3'
miRNA:   3'- -AGCUCCGACuuCaGGaguuUCCG---CCG- -5'
6455 5' -54.3 NC_001847.1 + 17100 0.68 0.848243
Target:  5'- gUCGGGGUcGggGUCgUCcu--GCGGCa -3'
miRNA:   3'- -AGCUCCGaCuuCAGgAGuuucCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 18211 0.66 0.939522
Target:  5'- cUCG-GGCUGGcGGUCuCUC---GGCGGUc -3'
miRNA:   3'- -AGCuCCGACU-UCAG-GAGuuuCCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.