miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 3' -54.2 NC_001847.1 + 2905 0.68 0.876676
Target:  5'- aGUACCGCgcGAGcGGGGCCac-GGUCCg -3'
miRNA:   3'- gUAUGGCGa-UUC-CUCUGGccuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 3971 0.66 0.955192
Target:  5'- --gGCgGC-GAGGGcGCCGGGGG-CCg -3'
miRNA:   3'- guaUGgCGaUUCCUcUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 9098 0.67 0.92187
Target:  5'- gGUGCCGCUcucGGAGccACCGcAGGcCCu -3'
miRNA:   3'- gUAUGGCGAuu-CCUC--UGGCcUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 11272 0.69 0.829212
Target:  5'- ---cCCGCcccAGGGccucaGGGCCGGGGGUCUc -3'
miRNA:   3'- guauGGCGa--UUCC-----UCUGGCCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 12077 0.68 0.883838
Target:  5'- --gGCCGC---GGAGcGCCGcGGGUCCg -3'
miRNA:   3'- guaUGGCGauuCCUC-UGGCcUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 12715 0.71 0.716403
Target:  5'- gGUGCCGCUGcccAGGAuuUUGGAGGgCCg -3'
miRNA:   3'- gUAUGGCGAU---UCCUcuGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 12946 0.66 0.955192
Target:  5'- uCGUGCgG-UGGGGcggcGGGCCGGGGGUggcCCg -3'
miRNA:   3'- -GUAUGgCgAUUCC----UCUGGCCUCCA---GG- -5'
6456 3' -54.2 NC_001847.1 + 14160 0.7 0.774216
Target:  5'- --gGCCGCUAGGGcgacGGCCGcGcuuacgcggcgcuGGGUCCg -3'
miRNA:   3'- guaUGGCGAUUCCu---CUGGC-C-------------UCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 17784 0.67 0.92187
Target:  5'- --gGCCGCUAgguucAGGAcgggccccagcgGGCgGGAGGgcgCCa -3'
miRNA:   3'- guaUGGCGAU-----UCCU------------CUGgCCUCCa--GG- -5'
6456 3' -54.2 NC_001847.1 + 18011 0.66 0.954799
Target:  5'- --gGCUGUUGggcguGGGGGgcguugcGCCGGuGGUCCc -3'
miRNA:   3'- guaUGGCGAU-----UCCUC-------UGGCCuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 20256 0.69 0.845847
Target:  5'- --gGCCGCgaGAGcGAGACgGcGAGGUCg -3'
miRNA:   3'- guaUGGCGa-UUC-CUCUGgC-CUCCAGg -5'
6456 3' -54.2 NC_001847.1 + 21579 0.68 0.86929
Target:  5'- --gGCgGgaGAGGGGGCCGcGGGGcCCc -3'
miRNA:   3'- guaUGgCgaUUCCUCUGGC-CUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 21642 0.7 0.802901
Target:  5'- --gGCCGCgcccGGGcgcGACCGGAGGgcgagCCc -3'
miRNA:   3'- guaUGGCGau--UCCu--CUGGCCUCCa----GG- -5'
6456 3' -54.2 NC_001847.1 + 21685 0.68 0.86929
Target:  5'- gGUAUgGC-GAGGAGcccggcgaggaGCCGGAGGaCCa -3'
miRNA:   3'- gUAUGgCGaUUCCUC-----------UGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 27787 0.67 0.916134
Target:  5'- --gACgGCgccGGAGACgCGGGGG-CCa -3'
miRNA:   3'- guaUGgCGauuCCUCUG-GCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 29372 0.66 0.955192
Target:  5'- --gACCGCgc-GGcGGCCGGAGcugCCg -3'
miRNA:   3'- guaUGGCGauuCCuCUGGCCUCca-GG- -5'
6456 3' -54.2 NC_001847.1 + 29590 0.67 0.910154
Target:  5'- --cGCCGCgcc--GGGCCGGGGG-CCg -3'
miRNA:   3'- guaUGGCGauuccUCUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 29646 0.66 0.942364
Target:  5'- --cGCCGC--GGGcGGAcCCGGAggacgGGUCCg -3'
miRNA:   3'- guaUGGCGauUCC-UCU-GGCCU-----CCAGG- -5'
6456 3' -54.2 NC_001847.1 + 30660 0.71 0.765642
Target:  5'- gGUGCuggCGCUGuuGGAGGgcuacCCGGAGGUUCg -3'
miRNA:   3'- gUAUG---GCGAUu-CCUCU-----GGCCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 31210 0.68 0.883838
Target:  5'- --cGCCGCUGGugcuGGAGGCCGcGGcGGcgCCg -3'
miRNA:   3'- guaUGGCGAUU----CCUCUGGC-CU-CCa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.