miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 3' -54.2 NC_001847.1 + 134543 0.7 0.784552
Target:  5'- --cGCCGCUGcGGAGcgGCCgcGGAGGgCCa -3'
miRNA:   3'- guaUGGCGAUuCCUC--UGG--CCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 134098 0.66 0.946879
Target:  5'- --cGCCGCUugcucuGGcGAgCaGAGGUCCa -3'
miRNA:   3'- guaUGGCGAuu----CCuCUgGcCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 134023 0.68 0.883838
Target:  5'- --cGCCGCUGGugcuGGAGGCCGcGGcGGcgCCg -3'
miRNA:   3'- guaUGGCGAUU----CCUCUGGC-CU-CCa-GG- -5'
6456 3' -54.2 NC_001847.1 + 132459 0.66 0.942364
Target:  5'- --cGCCGC--GGGcGGAcCCGGAggacgGGUCCg -3'
miRNA:   3'- guaUGGCGauUCC-UCU-GGCCU-----CCAGG- -5'
6456 3' -54.2 NC_001847.1 + 132403 0.67 0.910154
Target:  5'- --cGCCGCgcc--GGGCCGGGGG-CCg -3'
miRNA:   3'- guaUGGCGauuccUCUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 130600 0.67 0.916134
Target:  5'- --gACgGCgccGGAGACgCGGGGG-CCa -3'
miRNA:   3'- guaUGgCGauuCCUCUG-GCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 128835 0.68 0.876676
Target:  5'- --gGCCGCgcgcaucGAGGCCGaccucgccGAGGUCCg -3'
miRNA:   3'- guaUGGCGauuc---CUCUGGC--------CUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 125427 0.69 0.853077
Target:  5'- --cGCCGCcgGAGGAcccgcgcguggcuGGCCGGAGGa-- -3'
miRNA:   3'- guaUGGCGa-UUCCU-------------CUGGCCUCCagg -5'
6456 3' -54.2 NC_001847.1 + 124498 0.68 0.86929
Target:  5'- gGUAUgGC-GAGGAGcccggcgaggaGCCGGAGGaCCa -3'
miRNA:   3'- gUAUGgCGaUUCCUC-----------UGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 124455 0.7 0.802901
Target:  5'- --gGCCGCgcccGGGcgcGACCGGAGGgcgagCCc -3'
miRNA:   3'- guaUGGCGau--UCCu--CUGGCCUCCa----GG- -5'
6456 3' -54.2 NC_001847.1 + 124392 0.68 0.86929
Target:  5'- --gGCgGgaGAGGGGGCCGcGGGGcCCc -3'
miRNA:   3'- guaUGgCgaUUCCUCUGGC-CUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 123549 0.66 0.932607
Target:  5'- --gGCCGCUGcgaacGGGgcuuGGGCCGGGGccgCCg -3'
miRNA:   3'- guaUGGCGAU-----UCC----UCUGGCCUCca-GG- -5'
6456 3' -54.2 NC_001847.1 + 123498 0.69 0.861686
Target:  5'- --cGCCGC-AAGcGGGGCCGG-GG-CCa -3'
miRNA:   3'- guaUGGCGaUUC-CUCUGGCCuCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 121671 0.68 0.86854
Target:  5'- --cGCCGCUGuGGGGugCGGcccgagcAGGUgCg -3'
miRNA:   3'- guaUGGCGAUuCCUCugGCC-------UCCAgG- -5'
6456 3' -54.2 NC_001847.1 + 115853 0.74 0.592858
Target:  5'- --gGCCGUcaacaacGAGG-GACCGGAGGUCg -3'
miRNA:   3'- guaUGGCGa------UUCCuCUGGCCUCCAGg -5'
6456 3' -54.2 NC_001847.1 + 114085 0.69 0.829212
Target:  5'- ---cCCGCcccAGGGccucaGGGCCGGGGGUCUc -3'
miRNA:   3'- guauGGCGa--UUCC-----UCUGGCCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 110013 0.66 0.946879
Target:  5'- --gGCCGUgGAGGcGAUcaccaCGGAGGUCg -3'
miRNA:   3'- guaUGGCGaUUCCuCUG-----GCCUCCAGg -5'
6456 3' -54.2 NC_001847.1 + 108081 0.7 0.802901
Target:  5'- gGUGCCGCccGGGGGGCUGcGGG-CCu -3'
miRNA:   3'- gUAUGGCGauUCCUCUGGCcUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 106774 0.67 0.915547
Target:  5'- --cGCCGuCUccggcgcGAGGGcGCCGGGGGcCCg -3'
miRNA:   3'- guaUGGC-GA-------UUCCUcUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 106437 0.66 0.942364
Target:  5'- --cGCCGCgcacaAAGGGGucCCGGuAGG-CCa -3'
miRNA:   3'- guaUGGCGa----UUCCUCu-GGCC-UCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.