miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 3' -54.2 NC_001847.1 + 124498 0.68 0.86929
Target:  5'- gGUAUgGC-GAGGAGcccggcgaggaGCCGGAGGaCCa -3'
miRNA:   3'- gUAUGgCGaUUCCUC-----------UGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 115853 0.74 0.592858
Target:  5'- --gGCCGUcaacaacGAGG-GACCGGAGGUCg -3'
miRNA:   3'- guaUGGCGa------UUCCuCUGGCCUCCAGg -5'
6456 3' -54.2 NC_001847.1 + 50468 0.73 0.654978
Target:  5'- --aGCCGCUGccGcAGACCGGcgccGGUCCg -3'
miRNA:   3'- guaUGGCGAUucC-UCUGGCCu---CCAGG- -5'
6456 3' -54.2 NC_001847.1 + 34170 0.69 0.820614
Target:  5'- --gGCgGCUGAGGcgcugcGGGCCGGGGGcgcgcacgUCCc -3'
miRNA:   3'- guaUGgCGAUUCC------UCUGGCCUCC--------AGG- -5'
6456 3' -54.2 NC_001847.1 + 114085 0.69 0.829212
Target:  5'- ---cCCGCcccAGGGccucaGGGCCGGGGGUCUc -3'
miRNA:   3'- guauGGCGa--UUCC-----UCUGGCCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 76986 0.72 0.681793
Target:  5'- --cGCCGCggucgcccgccucGAGGAcagcGACCaGGAGGUCCu -3'
miRNA:   3'- guaUGGCGa------------UUCCU----CUGG-CCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 14160 0.7 0.774216
Target:  5'- --gGCCGCUAGGGcgacGGCCGcGcuuacgcggcgcuGGGUCCg -3'
miRNA:   3'- guaUGGCGAUUCCu---CUGGC-C-------------UCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 124455 0.7 0.802901
Target:  5'- --gGCCGCgcccGGGcgcGACCGGAGGgcgagCCc -3'
miRNA:   3'- guaUGGCGau--UCCu--CUGGCCUCCa----GG- -5'
6456 3' -54.2 NC_001847.1 + 124392 0.68 0.86929
Target:  5'- --gGCgGgaGAGGGGGCCGcGGGGcCCc -3'
miRNA:   3'- guaUGgCgaUUCCUCUGGC-CUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 101785 0.68 0.883838
Target:  5'- --gACUGCUGAGGgugaGGugCGaGGGGcCCa -3'
miRNA:   3'- guaUGGCGAUUCC----UCugGC-CUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 29372 0.66 0.955192
Target:  5'- --gACCGCgc-GGcGGCCGGAGcugCCg -3'
miRNA:   3'- guaUGGCGauuCCuCUGGCCUCca-GG- -5'
6456 3' -54.2 NC_001847.1 + 37589 0.71 0.746245
Target:  5'- -cUGCgGCUGcGGcGGCCGGGGG-CCg -3'
miRNA:   3'- guAUGgCGAUuCCuCUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 12715 0.71 0.716403
Target:  5'- gGUGCCGCUGcccAGGAuuUUGGAGGgCCg -3'
miRNA:   3'- gUAUGGCGAU---UCCUcuGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 52024 0.69 0.837625
Target:  5'- --gGCCGCcGAGGAGgugcuacgcgaGgCGGAGGcCCg -3'
miRNA:   3'- guaUGGCGaUUCCUC-----------UgGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 20256 0.69 0.845847
Target:  5'- --gGCCGCgaGAGcGAGACgGcGAGGUCg -3'
miRNA:   3'- guaUGGCGa-UUC-CUCUGgC-CUCCAGg -5'
6456 3' -54.2 NC_001847.1 + 30660 0.71 0.765642
Target:  5'- gGUGCuggCGCUGuuGGAGGgcuacCCGGAGGUUCg -3'
miRNA:   3'- gUAUG---GCGAUu-CCUCU-----GGCCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 12077 0.68 0.883838
Target:  5'- --gGCCGC---GGAGcGCCGcGGGUCCg -3'
miRNA:   3'- guaUGGCGauuCCUC-UGGCcUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 134023 0.68 0.883838
Target:  5'- --cGCCGCUGGugcuGGAGGCCGcGGcGGcgCCg -3'
miRNA:   3'- guaUGGCGAUU----CCUCUGGC-CU-CCa-GG- -5'
6456 3' -54.2 NC_001847.1 + 134543 0.7 0.784552
Target:  5'- --cGCCGCUGcGGAGcgGCCgcGGAGGgCCa -3'
miRNA:   3'- guaUGGCGAUuCCUC--UGG--CCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 63298 0.69 0.835121
Target:  5'- --cACCGCUGGGGAGGgcgugcucuuuuucCCGGAG--CCg -3'
miRNA:   3'- guaUGGCGAUUCCUCU--------------GGCCUCcaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.