miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 3' -54.2 NC_001847.1 + 69290 0.66 0.937607
Target:  5'- --cGCCGCgcAGGaAGGCguCGuaGAGGUCCg -3'
miRNA:   3'- guaUGGCGauUCC-UCUG--GC--CUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 52522 0.67 0.916134
Target:  5'- --gGCCGCgcggcccGGGGGauggucGCCGGAGGgcgcggCCg -3'
miRNA:   3'- guaUGGCGau-----UCCUC------UGGCCUCCa-----GG- -5'
6456 3' -54.2 NC_001847.1 + 106774 0.67 0.915547
Target:  5'- --cGCCGuCUccggcgcGAGGGcGCCGGGGGcCCg -3'
miRNA:   3'- guaUGGC-GA-------UUCCUcUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 132403 0.67 0.910154
Target:  5'- --cGCCGCgcc--GGGCCGGGGG-CCg -3'
miRNA:   3'- guaUGGCGauuccUCUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 9098 0.67 0.92187
Target:  5'- gGUGCCGCUcucGGAGccACCGcAGGcCCu -3'
miRNA:   3'- gUAUGGCGAuu-CCUC--UGGCcUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 47576 0.67 0.910154
Target:  5'- --gGCCGCgcacgcgccGAGGaAGGCCGGcggcAGGUCg -3'
miRNA:   3'- guaUGGCGa--------UUCC-UCUGGCC----UCCAGg -5'
6456 3' -54.2 NC_001847.1 + 43082 0.67 0.92187
Target:  5'- --cGCUGCUGGcucggcggcGGAGGcgcCCGGAGGcgCCg -3'
miRNA:   3'- guaUGGCGAUU---------CCUCU---GGCCUCCa-GG- -5'
6456 3' -54.2 NC_001847.1 + 70668 0.67 0.909543
Target:  5'- gCAU-CUGCUggggcugGAGGGGACCGcGGGcCCg -3'
miRNA:   3'- -GUAuGGCGA-------UUCCUCUGGCcUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 73725 0.67 0.927361
Target:  5'- --gGCCGCgggcgucGAGGGccGGCUGGAGGagggCCa -3'
miRNA:   3'- guaUGGCGa------UUCCU--CUGGCCUCCa---GG- -5'
6456 3' -54.2 NC_001847.1 + 130600 0.67 0.916134
Target:  5'- --gACgGCgccGGAGACgCGGGGG-CCa -3'
miRNA:   3'- guaUGgCGauuCCUCUG-GCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 29590 0.67 0.910154
Target:  5'- --cGCCGCgcc--GGGCCGGGGG-CCg -3'
miRNA:   3'- guaUGGCGauuccUCUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 33914 0.67 0.915547
Target:  5'- --gGCUGCUcGGGGAGGCUGGccuccccgugugcAGGcCCg -3'
miRNA:   3'- guaUGGCGA-UUCCUCUGGCC-------------UCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 27787 0.67 0.916134
Target:  5'- --gACgGCgccGGAGACgCGGGGG-CCa -3'
miRNA:   3'- guaUGgCGauuCCUCUG-GCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 17784 0.67 0.92187
Target:  5'- --gGCCGCUAgguucAGGAcgggccccagcgGGCgGGAGGgcgCCa -3'
miRNA:   3'- guaUGGCGAU-----UCCU------------CUGgCCUCCa--GG- -5'
6456 3' -54.2 NC_001847.1 + 77912 0.67 0.92187
Target:  5'- -uUGCCGaaggcaAAGGAGACCGGcGGgcggCUg -3'
miRNA:   3'- guAUGGCga----UUCCUCUGGCCuCCa---GG- -5'
6456 3' -54.2 NC_001847.1 + 38159 0.67 0.92187
Target:  5'- --cGCCGCcccGAGG-GACCGGAagcGG-CCg -3'
miRNA:   3'- guaUGGCGa--UUCCuCUGGCCU---CCaGG- -5'
6456 3' -54.2 NC_001847.1 + 54351 0.67 0.926823
Target:  5'- --cGCCGUaAAGGcguguauaaAGGCCGGGucgucccGGUCCg -3'
miRNA:   3'- guaUGGCGaUUCC---------UCUGGCCU-------CCAGG- -5'
6456 3' -54.2 NC_001847.1 + 90326 0.67 0.927361
Target:  5'- --gGCCGCc---GGGGCCGGGGGcgcagCCg -3'
miRNA:   3'- guaUGGCGauucCUCUGGCCUCCa----GG- -5'
6456 3' -54.2 NC_001847.1 + 21579 0.68 0.86929
Target:  5'- --gGCgGgaGAGGGGGCCGcGGGGcCCc -3'
miRNA:   3'- guaUGgCgaUUCCUCUGGC-CUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 21685 0.68 0.86929
Target:  5'- gGUAUgGC-GAGGAGcccggcgaggaGCCGGAGGaCCa -3'
miRNA:   3'- gUAUGgCGaUUCCUC-----------UGGCCUCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.