miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 3' -54.2 NC_001847.1 + 114085 0.69 0.829212
Target:  5'- ---cCCGCcccAGGGccucaGGGCCGGGGGUCUc -3'
miRNA:   3'- guauGGCGa--UUCC-----UCUGGCCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 52024 0.69 0.837625
Target:  5'- --gGCCGCcGAGGAGgugcuacgcgaGgCGGAGGcCCg -3'
miRNA:   3'- guaUGGCGaUUCCUC-----------UgGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 11272 0.69 0.829212
Target:  5'- ---cCCGCcccAGGGccucaGGGCCGGGGGUCUc -3'
miRNA:   3'- guauGGCGa--UUCC-----UCUGGCCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 44759 0.69 0.829212
Target:  5'- aCGUACgGCc--GGGGGCCGu-GGUCCg -3'
miRNA:   3'- -GUAUGgCGauuCCUCUGGCcuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 104827 0.69 0.837625
Target:  5'- --cGCCGCcGGGGGGGCgGGc-GUCCg -3'
miRNA:   3'- guaUGGCGaUUCCUCUGgCCucCAGG- -5'
6456 3' -54.2 NC_001847.1 + 125427 0.69 0.853077
Target:  5'- --cGCCGCcgGAGGAcccgcgcguggcuGGCCGGAGGa-- -3'
miRNA:   3'- guaUGGCGa-UUCCU-------------CUGGCCUCCagg -5'
6456 3' -54.2 NC_001847.1 + 123498 0.69 0.861686
Target:  5'- --cGCCGC-AAGcGGGGCCGG-GG-CCa -3'
miRNA:   3'- guaUGGCGaUUC-CUCUGGCCuCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 20256 0.69 0.845847
Target:  5'- --gGCCGCgaGAGcGAGACgGcGAGGUCg -3'
miRNA:   3'- guaUGGCGa-UUC-CUCUGgC-CUCCAGg -5'
6456 3' -54.2 NC_001847.1 + 121671 0.68 0.86854
Target:  5'- --cGCCGCUGuGGGGugCGGcccgagcAGGUgCg -3'
miRNA:   3'- guaUGGCGAUuCCUCugGCC-------UCCAgG- -5'
6456 3' -54.2 NC_001847.1 + 21579 0.68 0.86929
Target:  5'- --gGCgGgaGAGGGGGCCGcGGGGcCCc -3'
miRNA:   3'- guaUGgCgaUUCCUCUGGC-CUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 21685 0.68 0.86929
Target:  5'- gGUAUgGC-GAGGAGcccggcgaggaGCCGGAGGaCCa -3'
miRNA:   3'- gUAUGgCGaUUCCUC-----------UGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 2905 0.68 0.876676
Target:  5'- aGUACCGCgcGAGcGGGGCCac-GGUCCg -3'
miRNA:   3'- gUAUGGCGa-UUC-CUCUGGccuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 128835 0.68 0.876676
Target:  5'- --gGCCGCgcgcaucGAGGCCGaccucgccGAGGUCCg -3'
miRNA:   3'- guaUGGCGauuc---CUCUGGC--------CUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 31210 0.68 0.883838
Target:  5'- --cGCCGCUGGugcuGGAGGCCGcGGcGGcgCCg -3'
miRNA:   3'- guaUGGCGAUU----CCUCUGGC-CU-CCa-GG- -5'
6456 3' -54.2 NC_001847.1 + 69879 0.68 0.897469
Target:  5'- --cGCCGCUGcGGAccGGCCGcGGGcCCg -3'
miRNA:   3'- guaUGGCGAUuCCU--CUGGCcUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 101785 0.68 0.883838
Target:  5'- --gACUGCUGAGGgugaGGugCGaGGGGcCCa -3'
miRNA:   3'- guaUGGCGAUUCC----UCugGC-CUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 12077 0.68 0.883838
Target:  5'- --gGCCGC---GGAGcGCCGcGGGUCCg -3'
miRNA:   3'- guaUGGCGauuCCUC-UGGCcUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 105718 0.68 0.876676
Target:  5'- aGUACCGCgcGAGcGGGGCCac-GGUCCg -3'
miRNA:   3'- gUAUGGCGa-UUC-CUCUGGccuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 124498 0.68 0.86929
Target:  5'- gGUAUgGC-GAGGAGcccggcgaggaGCCGGAGGaCCa -3'
miRNA:   3'- gUAUGgCGaUUCCUC-----------UGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 124392 0.68 0.86929
Target:  5'- --gGCgGgaGAGGGGGCCGcGGGGcCCc -3'
miRNA:   3'- guaUGgCgaUUCCUCUGGC-CUCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.