miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 3' -54.2 NC_001847.1 + 31730 0.7 0.784552
Target:  5'- --cGCCGCUGcGGAGcgGCCgcGGAGGgCCa -3'
miRNA:   3'- guaUGGCGAUuCCUC--UGG--CCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 32920 0.75 0.50206
Target:  5'- --gGCCGCggacggGAGGAGGCCGGcggcGGGgCCg -3'
miRNA:   3'- guaUGGCGa-----UUCCUCUGGCC----UCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 32958 0.66 0.951154
Target:  5'- -----gGCgGAGGAGGCCGGGGaGgCCa -3'
miRNA:   3'- guauggCGaUUCCUCUGGCCUC-CaGG- -5'
6456 3' -54.2 NC_001847.1 + 33914 0.67 0.915547
Target:  5'- --gGCUGCUcGGGGAGGCUGGccuccccgugugcAGGcCCg -3'
miRNA:   3'- guaUGGCGA-UUCCUCUGGCC-------------UCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 34170 0.69 0.820614
Target:  5'- --gGCgGCUGAGGcgcugcGGGCCGGGGGcgcgcacgUCCc -3'
miRNA:   3'- guaUGgCGAUUCC------UCUGGCCUCC--------AGG- -5'
6456 3' -54.2 NC_001847.1 + 35197 0.66 0.942364
Target:  5'- gAUugUGCgaaguGGGAugGACUGGgcgGGGUCCg -3'
miRNA:   3'- gUAugGCGau---UCCU--CUGGCC---UCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 37589 0.71 0.746245
Target:  5'- -cUGCgGCUGcGGcGGCCGGGGG-CCg -3'
miRNA:   3'- guAUGgCGAUuCCuCUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 38159 0.67 0.92187
Target:  5'- --cGCCGCcccGAGG-GACCGGAagcGG-CCg -3'
miRNA:   3'- guaUGGCGa--UUCCuCUGGCCU---CCaGG- -5'
6456 3' -54.2 NC_001847.1 + 39386 0.66 0.955192
Target:  5'- --cGCCGUcGGGGAGccggcGCCGGccGGGcUCCu -3'
miRNA:   3'- guaUGGCGaUUCCUC-----UGGCC--UCC-AGG- -5'
6456 3' -54.2 NC_001847.1 + 42955 0.66 0.936133
Target:  5'- --cGCCGCgcgcgGGGGGGGCgGGccgccggccggcccGGGUUCg -3'
miRNA:   3'- guaUGGCGa----UUCCUCUGgCC--------------UCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 43082 0.67 0.92187
Target:  5'- --cGCUGCUGGcucggcggcGGAGGcgcCCGGAGGcgCCg -3'
miRNA:   3'- guaUGGCGAUU---------CCUCU---GGCCUCCa-GG- -5'
6456 3' -54.2 NC_001847.1 + 44759 0.69 0.829212
Target:  5'- aCGUACgGCc--GGGGGCCGu-GGUCCg -3'
miRNA:   3'- -GUAUGgCGauuCCUCUGGCcuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 47576 0.67 0.910154
Target:  5'- --gGCCGCgcacgcgccGAGGaAGGCCGGcggcAGGUCg -3'
miRNA:   3'- guaUGGCGa--------UUCC-UCUGGCC----UCCAGg -5'
6456 3' -54.2 NC_001847.1 + 50109 0.66 0.937607
Target:  5'- --aGCUGCUGGGGgccGGGCUGGGGcuGUCg -3'
miRNA:   3'- guaUGGCGAUUCC---UCUGGCCUC--CAGg -5'
6456 3' -54.2 NC_001847.1 + 50468 0.73 0.654978
Target:  5'- --aGCCGCUGccGcAGACCGGcgccGGUCCg -3'
miRNA:   3'- guaUGGCGAUucC-UCUGGCCu---CCAGG- -5'
6456 3' -54.2 NC_001847.1 + 50631 1.11 0.003023
Target:  5'- cCAUACCGCUAAGGAGACCGGAGGUCCc -3'
miRNA:   3'- -GUAUGGCGAUUCCUCUGGCCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 52024 0.69 0.837625
Target:  5'- --gGCCGCcGAGGAGgugcuacgcgaGgCGGAGGcCCg -3'
miRNA:   3'- guaUGGCGaUUCCUC-----------UgGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 52522 0.67 0.916134
Target:  5'- --gGCCGCgcggcccGGGGGauggucGCCGGAGGgcgcggCCg -3'
miRNA:   3'- guaUGGCGau-----UCCUC------UGGCCUCCa-----GG- -5'
6456 3' -54.2 NC_001847.1 + 54351 0.67 0.926823
Target:  5'- --cGCCGUaAAGGcguguauaaAGGCCGGGucgucccGGUCCg -3'
miRNA:   3'- guaUGGCGaUUCC---------UCUGGCCU-------CCAGG- -5'
6456 3' -54.2 NC_001847.1 + 54705 0.66 0.942364
Target:  5'- ---cCCGCgggGAGGAcGACgCGcGGGUCCc -3'
miRNA:   3'- guauGGCGa--UUCCU-CUG-GCcUCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.