miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 3' -54.2 NC_001847.1 + 130600 0.67 0.916134
Target:  5'- --gACgGCgccGGAGACgCGGGGG-CCa -3'
miRNA:   3'- guaUGgCGauuCCUCUG-GCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 56588 0.66 0.934636
Target:  5'- uGUGCCGCUGAGcGAcugcgugaucgaagaGGCCG-AGG-CCg -3'
miRNA:   3'- gUAUGGCGAUUC-CU---------------CUGGCcUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 70668 0.67 0.909543
Target:  5'- gCAU-CUGCUggggcugGAGGGGACCGcGGGcCCg -3'
miRNA:   3'- -GUAuGGCGA-------UUCCUCUGGCcUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 52024 0.69 0.837625
Target:  5'- --gGCCGCcGAGGAGgugcuacgcgaGgCGGAGGcCCg -3'
miRNA:   3'- guaUGGCGaUUCCUC-----------UgGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 100741 0.66 0.946879
Target:  5'- --cGCCGagcucucGGGGCCGG-GGUCCa -3'
miRNA:   3'- guaUGGCgauuc--CUCUGGCCuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 124455 0.7 0.802901
Target:  5'- --gGCCGCgcccGGGcgcGACCGGAGGgcgagCCc -3'
miRNA:   3'- guaUGGCGau--UCCu--CUGGCCUCCa----GG- -5'
6456 3' -54.2 NC_001847.1 + 52522 0.67 0.916134
Target:  5'- --gGCCGCgcggcccGGGGGauggucGCCGGAGGgcgcggCCg -3'
miRNA:   3'- guaUGGCGau-----UCCUC------UGGCCUCCa-----GG- -5'
6456 3' -54.2 NC_001847.1 + 132403 0.67 0.910154
Target:  5'- --cGCCGCgcc--GGGCCGGGGG-CCg -3'
miRNA:   3'- guaUGGCGauuccUCUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 14160 0.7 0.774216
Target:  5'- --gGCCGCUAGGGcgacGGCCGcGcuuacgcggcgcuGGGUCCg -3'
miRNA:   3'- guaUGGCGAUUCCu---CUGGC-C-------------UCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 70764 0.66 0.937607
Target:  5'- --gGCCGUUGGGGAccGGCUaguguuuuuGGAGGcCCu -3'
miRNA:   3'- guaUGGCGAUUCCU--CUGG---------CCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 73725 0.67 0.927361
Target:  5'- --gGCCGCgggcgucGAGGGccGGCUGGAGGagggCCa -3'
miRNA:   3'- guaUGGCGa------UUCCU--CUGGCCUCCa---GG- -5'
6456 3' -54.2 NC_001847.1 + 124498 0.68 0.86929
Target:  5'- gGUAUgGC-GAGGAGcccggcgaggaGCCGGAGGaCCa -3'
miRNA:   3'- gUAUGgCGaUUCCUC-----------UGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 20256 0.69 0.845847
Target:  5'- --gGCCGCgaGAGcGAGACgGcGAGGUCg -3'
miRNA:   3'- guaUGGCGa-UUC-CUCUGgC-CUCCAGg -5'
6456 3' -54.2 NC_001847.1 + 37589 0.71 0.746245
Target:  5'- -cUGCgGCUGcGGcGGCCGGGGG-CCg -3'
miRNA:   3'- guAUGgCGAUuCCuCUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 47576 0.67 0.910154
Target:  5'- --gGCCGCgcacgcgccGAGGaAGGCCGGcggcAGGUCg -3'
miRNA:   3'- guaUGGCGa--------UUCC-UCUGGCC----UCCAGg -5'
6456 3' -54.2 NC_001847.1 + 106774 0.67 0.915547
Target:  5'- --cGCCGuCUccggcgcGAGGGcGCCGGGGGcCCg -3'
miRNA:   3'- guaUGGC-GA-------UUCCUcUGGCCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 50109 0.66 0.937607
Target:  5'- --aGCUGCUGGGGgccGGGCUGGGGcuGUCg -3'
miRNA:   3'- guaUGGCGAUUCC---UCUGGCCUC--CAGg -5'
6456 3' -54.2 NC_001847.1 + 42955 0.66 0.936133
Target:  5'- --cGCCGCgcgcgGGGGGGGCgGGccgccggccggcccGGGUUCg -3'
miRNA:   3'- guaUGGCGa----UUCCUCUGgCC--------------UCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 21579 0.68 0.86929
Target:  5'- --gGCgGgaGAGGGGGCCGcGGGGcCCc -3'
miRNA:   3'- guaUGgCgaUUCCUCUGGC-CUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 21685 0.68 0.86929
Target:  5'- gGUAUgGC-GAGGAGcccggcgaggaGCCGGAGGaCCa -3'
miRNA:   3'- gUAUGgCGaUUCCUC-----------UGGCCUCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.