miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 3' -54.2 NC_001847.1 + 56588 0.66 0.934636
Target:  5'- uGUGCCGCUGAGcGAcugcgugaucgaagaGGCCG-AGG-CCg -3'
miRNA:   3'- gUAUGGCGAUUC-CU---------------CUGGCcUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 57397 0.7 0.775163
Target:  5'- --aACCGCUGGGGuAGGuCCGGGcGGgCCu -3'
miRNA:   3'- guaUGGCGAUUCC-UCU-GGCCU-CCaGG- -5'
6456 3' -54.2 NC_001847.1 + 58775 0.76 0.463634
Target:  5'- --gGCCGUgaaGAGGcGACCGG-GGUCCg -3'
miRNA:   3'- guaUGGCGa--UUCCuCUGGCCuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 59038 0.66 0.951154
Target:  5'- gGUGCgGCggcgGAGGAGAgUGGuGGUg- -3'
miRNA:   3'- gUAUGgCGa---UUCCUCUgGCCuCCAgg -5'
6456 3' -54.2 NC_001847.1 + 63298 0.69 0.835121
Target:  5'- --cACCGCUGGGGAGGgcgugcucuuuuucCCGGAG--CCg -3'
miRNA:   3'- guaUGGCGAUUCCUCU--------------GGCCUCcaGG- -5'
6456 3' -54.2 NC_001847.1 + 69290 0.66 0.937607
Target:  5'- --cGCCGCgcAGGaAGGCguCGuaGAGGUCCg -3'
miRNA:   3'- guaUGGCGauUCC-UCUG--GC--CUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 69879 0.68 0.897469
Target:  5'- --cGCCGCUGcGGAccGGCCGcGGGcCCg -3'
miRNA:   3'- guaUGGCGAUuCCU--CUGGCcUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 70668 0.67 0.909543
Target:  5'- gCAU-CUGCUggggcugGAGGGGACCGcGGGcCCg -3'
miRNA:   3'- -GUAuGGCGA-------UUCCUCUGGCcUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 70764 0.66 0.937607
Target:  5'- --gGCCGUUGGGGAccGGCUaguguuuuuGGAGGcCCu -3'
miRNA:   3'- guaUGGCGAUUCCU--CUGG---------CCUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 73725 0.67 0.927361
Target:  5'- --gGCCGCgggcgucGAGGGccGGCUGGAGGagggCCa -3'
miRNA:   3'- guaUGGCGa------UUCCU--CUGGCCUCCa---GG- -5'
6456 3' -54.2 NC_001847.1 + 76418 0.72 0.696124
Target:  5'- --gGCCGCcgGAGGAGcCCGGGGuGgCCg -3'
miRNA:   3'- guaUGGCGa-UUCCUCuGGCCUC-CaGG- -5'
6456 3' -54.2 NC_001847.1 + 76986 0.72 0.681793
Target:  5'- --cGCCGCggucgcccgccucGAGGAcagcGACCaGGAGGUCCu -3'
miRNA:   3'- guaUGGCGa------------UUCCU----CUGG-CCUCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 77912 0.67 0.92187
Target:  5'- -uUGCCGaaggcaAAGGAGACCGGcGGgcggCUg -3'
miRNA:   3'- guAUGGCga----UUCCUCUGGCCuCCa---GG- -5'
6456 3' -54.2 NC_001847.1 + 90326 0.67 0.927361
Target:  5'- --gGCCGCc---GGGGCCGGGGGcgcagCCg -3'
miRNA:   3'- guaUGGCGauucCUCUGGCCUCCa----GG- -5'
6456 3' -54.2 NC_001847.1 + 100741 0.66 0.946879
Target:  5'- --cGCCGagcucucGGGGCCGG-GGUCCa -3'
miRNA:   3'- guaUGGCgauuc--CUCUGGCCuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 101785 0.68 0.883838
Target:  5'- --gACUGCUGAGGgugaGGugCGaGGGGcCCa -3'
miRNA:   3'- guaUGGCGAUUCC----UCugGC-CUCCaGG- -5'
6456 3' -54.2 NC_001847.1 + 102413 0.71 0.746245
Target:  5'- --aGCCGCcggccGGAGGCCGaGAGGcgcUCCa -3'
miRNA:   3'- guaUGGCGauu--CCUCUGGC-CUCC---AGG- -5'
6456 3' -54.2 NC_001847.1 + 104827 0.69 0.837625
Target:  5'- --cGCCGCcGGGGGGGCgGGc-GUCCg -3'
miRNA:   3'- guaUGGCGaUUCCUCUGgCCucCAGG- -5'
6456 3' -54.2 NC_001847.1 + 105718 0.68 0.876676
Target:  5'- aGUACCGCgcGAGcGGGGCCac-GGUCCg -3'
miRNA:   3'- gUAUGGCGa-UUC-CUCUGGccuCCAGG- -5'
6456 3' -54.2 NC_001847.1 + 106437 0.66 0.942364
Target:  5'- --cGCCGCgcacaAAGGGGucCCGGuAGG-CCa -3'
miRNA:   3'- guaUGGCGa----UUCCUCu-GGCC-UCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.