miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 5' -69 NC_001847.1 + 50671 1.07 0.000259
Target:  5'- uUCACACCCCCGCCCCCCCCCCCGCUCc -3'
miRNA:   3'- -AGUGUGGGGGCGGGGGGGGGGGCGAG- -5'
6456 5' -69 NC_001847.1 + 32461 0.86 0.010826
Target:  5'- gCGCccuGCCCCCGCCCCgCCCCCCCGCccUCg -3'
miRNA:   3'- aGUG---UGGGGGCGGGG-GGGGGGGCG--AG- -5'
6456 5' -69 NC_001847.1 + 103003 0.83 0.019008
Target:  5'- -gGgGCCCCCGCCCCCgCCCCCGCc- -3'
miRNA:   3'- agUgUGGGGGCGGGGGgGGGGGCGag -5'
6456 5' -69 NC_001847.1 + 190 0.83 0.019008
Target:  5'- -gGgGCCCCCGCCCCCgCCCCCGCc- -3'
miRNA:   3'- agUgUGGGGGCGGGGGgGGGGGCGag -5'
6456 5' -69 NC_001847.1 + 61916 0.83 0.020004
Target:  5'- cCGCGCCgCCGCCCCCCUCCuCCGCgUCa -3'
miRNA:   3'- aGUGUGGgGGCGGGGGGGGG-GGCG-AG- -5'
6456 5' -69 NC_001847.1 + 24909 0.8 0.03327
Target:  5'- gUACGCCCCCcCCCCCCCCCCCcCa- -3'
miRNA:   3'- aGUGUGGGGGcGGGGGGGGGGGcGag -5'
6456 5' -69 NC_001847.1 + 127722 0.8 0.034124
Target:  5'- gUACGCCCCCcCCCCCCCCCCC-Ca- -3'
miRNA:   3'- aGUGUGGGGGcGGGGGGGGGGGcGag -5'
6456 5' -69 NC_001847.1 + 80587 0.79 0.037191
Target:  5'- gUCACGggcgcgacugcgucuUCCCCGCCCCCgCCCCCGC-Cg -3'
miRNA:   3'- -AGUGU---------------GGGGGCGGGGGgGGGGGCGaG- -5'
6456 5' -69 NC_001847.1 + 39961 0.79 0.038628
Target:  5'- aUCGCGCCCCCgaucgcGCCCCCgaucgcgCCCCCCGC-Ca -3'
miRNA:   3'- -AGUGUGGGGG------CGGGGG-------GGGGGGCGaG- -5'
6456 5' -69 NC_001847.1 + 59663 0.79 0.038726
Target:  5'- cUCGCGCCCgCCcgugcgcucugGCCCCuCCCCCCCGgUCg -3'
miRNA:   3'- -AGUGUGGG-GG-----------CGGGG-GGGGGGGCgAG- -5'
6456 5' -69 NC_001847.1 + 4245 0.78 0.043824
Target:  5'- -gGCACCgCCGCCCCCCgccucagUCCCCGCUUc -3'
miRNA:   3'- agUGUGGgGGCGGGGGG-------GGGGGCGAG- -5'
6456 5' -69 NC_001847.1 + 107058 0.78 0.043824
Target:  5'- -gGCACCgCCGCCCCCCgccucagUCCCCGCUUc -3'
miRNA:   3'- agUGUGGgGGCGGGGGG-------GGGGGCGAG- -5'
6456 5' -69 NC_001847.1 + 723 0.78 0.043934
Target:  5'- gUCGCGCCCCCuCCCuCCCUUCCCGCg- -3'
miRNA:   3'- -AGUGUGGGGGcGGG-GGGGGGGGCGag -5'
6456 5' -69 NC_001847.1 + 123303 0.78 0.043934
Target:  5'- gUC-CAUCCUccgcuaggCGCCCCCCCCCCCGCg- -3'
miRNA:   3'- -AGuGUGGGG--------GCGGGGGGGGGGGCGag -5'
6456 5' -69 NC_001847.1 + 103536 0.78 0.043934
Target:  5'- gUCGCGCCCCCuCCCuCCCUUCCCGCg- -3'
miRNA:   3'- -AGUGUGGGGGcGGG-GGGGGGGGCGag -5'
6456 5' -69 NC_001847.1 + 119811 0.78 0.045055
Target:  5'- aCGCAcCCCCCGCCCgCCCCCgcuacgCCCGCg- -3'
miRNA:   3'- aGUGU-GGGGGCGGG-GGGGG------GGGCGag -5'
6456 5' -69 NC_001847.1 + 118559 0.78 0.048588
Target:  5'- -gGCACCCCaCGCCgCCCCgaCCCCGCUg -3'
miRNA:   3'- agUGUGGGG-GCGG-GGGGg-GGGGCGAg -5'
6456 5' -69 NC_001847.1 + 27465 0.77 0.051092
Target:  5'- cCGCuGCCCgCCGCCCCCCCCCCUccccuGCg- -3'
miRNA:   3'- aGUG-UGGG-GGCGGGGGGGGGGG-----CGag -5'
6456 5' -69 NC_001847.1 + 130278 0.77 0.051092
Target:  5'- cCGCuGCCCgCCGCCCCCCCCCCUccccuGCg- -3'
miRNA:   3'- aGUG-UGGG-GGCGGGGGGGGGGG-----CGag -5'
6456 5' -69 NC_001847.1 + 10430 0.77 0.051092
Target:  5'- uUCGCGCUgCCGCCCCCgCgCCCgGCUCc -3'
miRNA:   3'- -AGUGUGGgGGCGGGGGgG-GGGgCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.