miRNA display CGI


Results 1 - 20 of 781 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6457 3' -63 NC_001847.1 + 47055 0.66 0.61127
Target:  5'- cCGGCGCgGCG-CGgGGcGCCGggCGg -3'
miRNA:   3'- cGUCGCGgCGCaGCgCCuCGGCgaGC- -5'
6457 3' -63 NC_001847.1 + 92255 0.66 0.61127
Target:  5'- uGCAGC-UCGCGcucuuggCGCGGAGCUugUCGg -3'
miRNA:   3'- -CGUCGcGGCGCa------GCGCCUCGGcgAGC- -5'
6457 3' -63 NC_001847.1 + 89474 0.66 0.61127
Target:  5'- aCGGCGCCGcCGUCGCaagccuGAaccGCCGCa-- -3'
miRNA:   3'- cGUCGCGGC-GCAGCGc-----CU---CGGCGagc -5'
6457 3' -63 NC_001847.1 + 65436 0.66 0.61127
Target:  5'- gGCGGCaGCCGCGcgcCGCGGAccgagcGCCGg--- -3'
miRNA:   3'- -CGUCG-CGGCGCa--GCGCCU------CGGCgagc -5'
6457 3' -63 NC_001847.1 + 74130 0.66 0.61127
Target:  5'- cGUGGUGCUGCG-CGUGGcGCCGgggCGa -3'
miRNA:   3'- -CGUCGCGGCGCaGCGCCuCGGCga-GC- -5'
6457 3' -63 NC_001847.1 + 74163 0.66 0.61127
Target:  5'- gGCGGCGCCucuCGgCGUGGGgcccauGCCGCgCGg -3'
miRNA:   3'- -CGUCGCGGc--GCaGCGCCU------CGGCGaGC- -5'
6457 3' -63 NC_001847.1 + 86230 0.66 0.61127
Target:  5'- aGCcuGCaCCGCGUgGacgaGGAGCUGCUgGg -3'
miRNA:   3'- -CGu-CGcGGCGCAgCg---CCUCGGCGAgC- -5'
6457 3' -63 NC_001847.1 + 28090 0.66 0.61127
Target:  5'- uGUGGCGCC-UGcC-CGGGGCCGCgcgCGa -3'
miRNA:   3'- -CGUCGCGGcGCaGcGCCUCGGCGa--GC- -5'
6457 3' -63 NC_001847.1 + 106427 0.66 0.61127
Target:  5'- uGCAGCcagGCCaugGCGUCGCGGcGCgCGUa-- -3'
miRNA:   3'- -CGUCG---CGG---CGCAGCGCCuCG-GCGagc -5'
6457 3' -63 NC_001847.1 + 131688 0.66 0.61127
Target:  5'- uGCAGCcagGCCaugGCGUCGCGGcGCgCGUa-- -3'
miRNA:   3'- -CGUCG---CGG---CGCAGCGCCuCG-GCGagc -5'
6457 3' -63 NC_001847.1 + 5651 0.66 0.61127
Target:  5'- aGUGGCgGUCGagGUUGCGGcGGCCGCUg- -3'
miRNA:   3'- -CGUCG-CGGCg-CAGCGCC-UCGGCGAgc -5'
6457 3' -63 NC_001847.1 + 132039 0.66 0.61127
Target:  5'- aGgGGCGCCgGCGcCGCGcGGCCGg-CGa -3'
miRNA:   3'- -CgUCGCGG-CGCaGCGCcUCGGCgaGC- -5'
6457 3' -63 NC_001847.1 + 61397 0.66 0.61127
Target:  5'- aCGGCGuuGCGUaCGUGGAcGaCGUUCa -3'
miRNA:   3'- cGUCGCggCGCA-GCGCCU-CgGCGAGc -5'
6457 3' -63 NC_001847.1 + 64611 0.66 0.61127
Target:  5'- cGCGcCGCCGCGggcggCgGCGGGGgCGCccgCGg -3'
miRNA:   3'- -CGUcGCGGCGCa----G-CGCCUCgGCGa--GC- -5'
6457 3' -63 NC_001847.1 + 17244 0.66 0.61127
Target:  5'- -gAGCGCCGCuuuuaCGCGGcuggcacgccGGCCGUUUa -3'
miRNA:   3'- cgUCGCGGCGca---GCGCC----------UCGGCGAGc -5'
6457 3' -63 NC_001847.1 + 17889 0.66 0.61127
Target:  5'- cGUGGcCGCCuCGUaCGCcGAGCCGCUg- -3'
miRNA:   3'- -CGUC-GCGGcGCA-GCGcCUCGGCGAgc -5'
6457 3' -63 NC_001847.1 + 32844 0.66 0.61127
Target:  5'- aCGGCGCCGCacagcucgaGCGGGcccgcGCCGC-CGg -3'
miRNA:   3'- cGUCGCGGCGcag------CGCCU-----CGGCGaGC- -5'
6457 3' -63 NC_001847.1 + 51130 0.66 0.61127
Target:  5'- aGCuGCGCCgccgacuggGCGUCGUGcGccagcAGCCGCUg- -3'
miRNA:   3'- -CGuCGCGG---------CGCAGCGC-C-----UCGGCGAgc -5'
6457 3' -63 NC_001847.1 + 58226 0.66 0.61127
Target:  5'- gGCGGCGCuCGCcgccgaaGCGcGAGCUGCgUCa -3'
miRNA:   3'- -CGUCGCG-GCGcag----CGC-CUCGGCG-AGc -5'
6457 3' -63 NC_001847.1 + 105712 0.66 0.61127
Target:  5'- cGCcGCGCCGgGcCG-GGGGCCGgUgGa -3'
miRNA:   3'- -CGuCGCGGCgCaGCgCCUCGGCgAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.