miRNA display CGI


Results 1 - 20 of 781 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6457 3' -63 NC_001847.1 + 89474 0.66 0.61127
Target:  5'- aCGGCGCCGcCGUCGCaagccuGAaccGCCGCa-- -3'
miRNA:   3'- cGUCGCGGC-GCAGCGc-----CU---CGGCGagc -5'
6457 3' -63 NC_001847.1 + 102769 0.66 0.610294
Target:  5'- aGCGGCGCCcggucuguuguuuGUGUCGCccagcaggauGGcGCCGCcCGc -3'
miRNA:   3'- -CGUCGCGG-------------CGCAGCG----------CCuCGGCGaGC- -5'
6457 3' -63 NC_001847.1 + 57235 0.66 0.610294
Target:  5'- cGCAGCgcuggccGCCGCGcUGgGGuugagcuuAGCCGcCUCGg -3'
miRNA:   3'- -CGUCG-------CGGCGCaGCgCC--------UCGGC-GAGC- -5'
6457 3' -63 NC_001847.1 + 54851 0.66 0.601512
Target:  5'- cCAGCucccGCCGCugGUCGCGGAugcaCCGCcCGa -3'
miRNA:   3'- cGUCG----CGGCG--CAGCGCCUc---GGCGaGC- -5'
6457 3' -63 NC_001847.1 + 67377 0.66 0.601512
Target:  5'- aCGGCGuucgaCCGCG-CGCcc-GCCGCUCGg -3'
miRNA:   3'- cGUCGC-----GGCGCaGCGccuCGGCGAGC- -5'
6457 3' -63 NC_001847.1 + 33210 0.66 0.601512
Target:  5'- cGCAGCGCCuCGgcCGCG-AGCgcguccaGCUCGg -3'
miRNA:   3'- -CGUCGCGGcGCa-GCGCcUCGg------CGAGC- -5'
6457 3' -63 NC_001847.1 + 35520 0.66 0.601512
Target:  5'- aGCuGCGCCaGCG-CGCucggaucaGAGCCucGCUCGg -3'
miRNA:   3'- -CGuCGCGG-CGCaGCGc-------CUCGG--CGAGC- -5'
6457 3' -63 NC_001847.1 + 74426 0.66 0.601512
Target:  5'- cGCAGCG-CGCG-CGCGG-GCCccaGCagCGg -3'
miRNA:   3'- -CGUCGCgGCGCaGCGCCuCGG---CGa-GC- -5'
6457 3' -63 NC_001847.1 + 124915 0.66 0.601512
Target:  5'- cCGGUGCCGCc-CGC-GAGCCGCg-- -3'
miRNA:   3'- cGUCGCGGCGcaGCGcCUCGGCGagc -5'
6457 3' -63 NC_001847.1 + 131688 0.66 0.61127
Target:  5'- uGCAGCcagGCCaugGCGUCGCGGcGCgCGUa-- -3'
miRNA:   3'- -CGUCG---CGG---CGCAGCGCCuCG-GCGagc -5'
6457 3' -63 NC_001847.1 + 5651 0.66 0.61127
Target:  5'- aGUGGCgGUCGagGUUGCGGcGGCCGCUg- -3'
miRNA:   3'- -CGUCG-CGGCg-CAGCGCC-UCGGCGAgc -5'
6457 3' -63 NC_001847.1 + 132039 0.66 0.61127
Target:  5'- aGgGGCGCCgGCGcCGCGcGGCCGg-CGa -3'
miRNA:   3'- -CgUCGCGG-CGCaGCGCcUCGGCgaGC- -5'
6457 3' -63 NC_001847.1 + 61397 0.66 0.61127
Target:  5'- aCGGCGuuGCGUaCGUGGAcGaCGUUCa -3'
miRNA:   3'- cGUCGCggCGCA-GCGCCU-CgGCGAGc -5'
6457 3' -63 NC_001847.1 + 64611 0.66 0.61127
Target:  5'- cGCGcCGCCGCGggcggCgGCGGGGgCGCccgCGg -3'
miRNA:   3'- -CGUcGCGGCGCa----G-CGCCUCgGCGa--GC- -5'
6457 3' -63 NC_001847.1 + 17244 0.66 0.61127
Target:  5'- -gAGCGCCGCuuuuaCGCGGcuggcacgccGGCCGUUUa -3'
miRNA:   3'- cgUCGCGGCGca---GCGCC----------UCGGCGAGc -5'
6457 3' -63 NC_001847.1 + 17889 0.66 0.61127
Target:  5'- cGUGGcCGCCuCGUaCGCcGAGCCGCUg- -3'
miRNA:   3'- -CGUC-GCGGcGCA-GCGcCUCGGCGAgc -5'
6457 3' -63 NC_001847.1 + 32844 0.66 0.61127
Target:  5'- aCGGCGCCGCacagcucgaGCGGGcccgcGCCGC-CGg -3'
miRNA:   3'- cGUCGCGGCGcag------CGCCU-----CGGCGaGC- -5'
6457 3' -63 NC_001847.1 + 51130 0.66 0.61127
Target:  5'- aGCuGCGCCgccgacuggGCGUCGUGcGccagcAGCCGCUg- -3'
miRNA:   3'- -CGuCGCGG---------CGCAGCGC-C-----UCGGCGAgc -5'
6457 3' -63 NC_001847.1 + 58226 0.66 0.61127
Target:  5'- gGCGGCGCuCGCcgccgaaGCGcGAGCUGCgUCa -3'
miRNA:   3'- -CGUCGCG-GCGcag----CGC-CUCGGCG-AGc -5'
6457 3' -63 NC_001847.1 + 105712 0.66 0.61127
Target:  5'- cGCcGCGCCGgGcCG-GGGGCCGgUgGa -3'
miRNA:   3'- -CGuCGCGGCgCaGCgCCUCGGCgAgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.