miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6457 5' -55.2 NC_001847.1 + 3241 0.66 0.916246
Target:  5'- cCGCGccguGCU-CGCCGGCGGcaGGGGCg -3'
miRNA:   3'- -GCGCauuuCGAcGCGGCUGUC--CUCUG- -5'
6457 5' -55.2 NC_001847.1 + 18765 0.66 0.916246
Target:  5'- cCGCGgcUAAGGCgGCgGCCGACAGcGcGAg -3'
miRNA:   3'- -GCGC--AUUUCGaCG-CGGCUGUC-CuCUg -5'
6457 5' -55.2 NC_001847.1 + 106054 0.66 0.916246
Target:  5'- cCGCGccguGCU-CGCCGGCGGcaGGGGCg -3'
miRNA:   3'- -GCGCauuuCGAcGCGGCUGUC--CUCUG- -5'
6457 5' -55.2 NC_001847.1 + 17331 0.66 0.916246
Target:  5'- cCGCGUAGccGGCgccuucuaGCGCUGGCuGGGGu- -3'
miRNA:   3'- -GCGCAUU--UCGa-------CGCGGCUGuCCUCug -5'
6457 5' -55.2 NC_001847.1 + 31260 0.66 0.915657
Target:  5'- gGCGUGGAcugggacGCggaccaGgGCCcGCGGGAGACg -3'
miRNA:   3'- gCGCAUUU-------CGa-----CgCGGcUGUCCUCUG- -5'
6457 5' -55.2 NC_001847.1 + 134073 0.66 0.915657
Target:  5'- gGCGUGGAcugggacGCggaccaGgGCCcGCGGGAGACg -3'
miRNA:   3'- gCGCAUUU-------CGa-----CgCGGcUGUCCUCUG- -5'
6457 5' -55.2 NC_001847.1 + 30246 0.66 0.914472
Target:  5'- gCGCGUGucGCUggcggcguugcagcGCGCCG-CGGcGcAGACg -3'
miRNA:   3'- -GCGCAUuuCGA--------------CGCGGCuGUC-C-UCUG- -5'
6457 5' -55.2 NC_001847.1 + 19803 0.66 0.910245
Target:  5'- gGCG-GAGGCggugGCGgUGGCGGGGcGGCa -3'
miRNA:   3'- gCGCaUUUCGa---CGCgGCUGUCCU-CUG- -5'
6457 5' -55.2 NC_001847.1 + 107701 0.66 0.910245
Target:  5'- uGCGguuGGCgGCGCUcGCGGGcGGGCa -3'
miRNA:   3'- gCGCauuUCGaCGCGGcUGUCC-UCUG- -5'
6457 5' -55.2 NC_001847.1 + 6119 0.66 0.910245
Target:  5'- gCGCGgcgcGAGCgccuCGCCGccauCGGGGGGCu -3'
miRNA:   3'- -GCGCau--UUCGac--GCGGCu---GUCCUCUG- -5'
6457 5' -55.2 NC_001847.1 + 53800 0.66 0.910245
Target:  5'- cCGCGagGAGGuCUGCGCCcccuGGCGcgccggagcGGGGGCg -3'
miRNA:   3'- -GCGCa-UUUC-GACGCGG----CUGU---------CCUCUG- -5'
6457 5' -55.2 NC_001847.1 + 74679 0.66 0.910245
Target:  5'- gGCGccauGGCggacGCGcCCGACGGG-GGCa -3'
miRNA:   3'- gCGCauu-UCGa---CGC-GGCUGUCCuCUG- -5'
6457 5' -55.2 NC_001847.1 + 83173 0.66 0.910245
Target:  5'- aCGCccgacGGGCUgGCGgaCGGCGGGGGGCg -3'
miRNA:   3'- -GCGcau--UUCGA-CGCg-GCUGUCCUCUG- -5'
6457 5' -55.2 NC_001847.1 + 101381 0.66 0.910245
Target:  5'- cCGCG-GGGGCUGCccgcggcgccGCCGGCAaucGGGGGu -3'
miRNA:   3'- -GCGCaUUUCGACG----------CGGCUGU---CCUCUg -5'
6457 5' -55.2 NC_001847.1 + 59559 0.66 0.910245
Target:  5'- gGCGgcgGGGGCgGUGCCGGC-GGAaGCu -3'
miRNA:   3'- gCGCa--UUUCGaCGCGGCUGuCCUcUG- -5'
6457 5' -55.2 NC_001847.1 + 57502 0.66 0.909631
Target:  5'- gCGCGccGAGCU-CGCCGACAcGGGucugcucGACu -3'
miRNA:   3'- -GCGCauUUCGAcGCGGCUGU-CCU-------CUG- -5'
6457 5' -55.2 NC_001847.1 + 53429 0.66 0.909631
Target:  5'- gCGCGUGccGCUuccaccggcgcgcGCGCCuggcgcucuacGGCGGcGAGACg -3'
miRNA:   3'- -GCGCAUuuCGA-------------CGCGG-----------CUGUC-CUCUG- -5'
6457 5' -55.2 NC_001847.1 + 130442 0.66 0.907776
Target:  5'- cCGCGgaccucgGC-CCGACGGGGGGCu -3'
miRNA:   3'- -GCGCauuucgaCGcGGCUGUCCUCUG- -5'
6457 5' -55.2 NC_001847.1 + 27629 0.66 0.907775
Target:  5'- cCGCGgaccucgGC-CCGACGGGGGGCu -3'
miRNA:   3'- -GCGCauuucgaCGcGGCUGUCCUCUG- -5'
6457 5' -55.2 NC_001847.1 + 33545 0.66 0.903999
Target:  5'- aCGCGgagguuGAGUcgagGCGCaCG-CGGGGGGCg -3'
miRNA:   3'- -GCGCau----UUCGa---CGCG-GCuGUCCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.