miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6459 3' -54.7 NC_001847.1 + 81500 0.66 0.929269
Target:  5'- cCGGGUGCccggucuUUGUCgcggaCGCGAGucugcgcauccguucGGCGGCCGa -3'
miRNA:   3'- -GUUCAUG-------AACAG-----GCGCUU---------------CCGCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 85499 0.66 0.92766
Target:  5'- cCGGGUGCgcugcugcUGggCGCGcuGGCGGCCu -3'
miRNA:   3'- -GUUCAUGa-------ACagGCGCuuCCGCCGGu -5'
6459 3' -54.7 NC_001847.1 + 134318 0.66 0.92766
Target:  5'- gCGGG-GCUUccgCCGCGgcGGCGGCa- -3'
miRNA:   3'- -GUUCaUGAAca-GGCGCuuCCGCCGgu -5'
6459 3' -54.7 NC_001847.1 + 52119 0.66 0.92766
Target:  5'- -cAGUGCaucacUG-CCGCGggGucgcGCGGCCGu -3'
miRNA:   3'- guUCAUGa----ACaGGCGCuuC----CGCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 104319 0.66 0.922134
Target:  5'- gGGGUAgag--CCGCGcguAGGCGGCCu -3'
miRNA:   3'- gUUCAUgaacaGGCGCu--UCCGCCGGu -5'
6459 3' -54.7 NC_001847.1 + 6673 0.66 0.922134
Target:  5'- gCGAG-GCUaGgCCGCGgcGGCcGGCCGg -3'
miRNA:   3'- -GUUCaUGAaCaGGCGCuuCCG-CCGGU- -5'
6459 3' -54.7 NC_001847.1 + 55061 0.66 0.922134
Target:  5'- gAGGaGCUgg-CCGCGuuuaugcuGGCGGCCGc -3'
miRNA:   3'- gUUCaUGAacaGGCGCuu------CCGCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 29333 0.66 0.922134
Target:  5'- gCGAGcGCgaGUgCGCG--GGCGGCCGu -3'
miRNA:   3'- -GUUCaUGaaCAgGCGCuuCCGCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 133796 0.66 0.922134
Target:  5'- gGGGUAgag--CCGCGcguAGGCGGCCu -3'
miRNA:   3'- gUUCAUgaacaGGCGCu--UCCGCCGGu -5'
6459 3' -54.7 NC_001847.1 + 27664 0.66 0.922134
Target:  5'- ----cGCcg--CCGCGgcGGCGGCCGa -3'
miRNA:   3'- guucaUGaacaGGCGCuuCCGCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 59728 0.66 0.920999
Target:  5'- gCAGGUACgUGUggcCCGCGAugcccgccucgcGGCGGCg- -3'
miRNA:   3'- -GUUCAUGaACA---GGCGCUu-----------CCGCCGgu -5'
6459 3' -54.7 NC_001847.1 + 130793 0.66 0.916359
Target:  5'- gGAGgcgGCcgcggCCgggGCGGAGGCGGCCGc -3'
miRNA:   3'- gUUCa--UGaaca-GG---CGCUUCCGCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 76967 0.66 0.916359
Target:  5'- -uAGUGCacaaacUG-CCaGCaGAGGGCGGCCAg -3'
miRNA:   3'- guUCAUGa-----ACaGG-CG-CUUCCGCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 107322 0.66 0.916359
Target:  5'- gGAGgcgGCcgcggCCgggGCGGAGGCGGCCGc -3'
miRNA:   3'- gUUCa--UGaaca-GG---CGCUUCCGCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 82871 0.66 0.916359
Target:  5'- --cGUGCUcGcCCGUGcGGGCGcGCCGc -3'
miRNA:   3'- guuCAUGAaCaGGCGCuUCCGC-CGGU- -5'
6459 3' -54.7 NC_001847.1 + 14130 0.66 0.910336
Target:  5'- aCGGGcgauggGCgggGcCCGCGccuGGGCGGCCGc -3'
miRNA:   3'- -GUUCa-----UGaa-CaGGCGCu--UCCGCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 54326 0.66 0.910336
Target:  5'- aAAGUGC---UCCGgGGA-GCGGCCAa -3'
miRNA:   3'- gUUCAUGaacAGGCgCUUcCGCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 121373 0.66 0.904066
Target:  5'- -cGGUGCcgcgCCGCGGcaGGGgGGCCGc -3'
miRNA:   3'- guUCAUGaacaGGCGCU--UCCgCCGGU- -5'
6459 3' -54.7 NC_001847.1 + 34165 0.66 0.902783
Target:  5'- -cGGUGCccagcaccgCCGCGAAGGCugGGCCc -3'
miRNA:   3'- guUCAUGaaca-----GGCGCUUCCG--CCGGu -5'
6459 3' -54.7 NC_001847.1 + 35982 0.67 0.897552
Target:  5'- cCAAGgcgcGCgcagCCGCGcugcAGGCGGCCGc -3'
miRNA:   3'- -GUUCa---UGaacaGGCGCu---UCCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.