miRNA display CGI


Results 1 - 20 of 393 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6459 5' -64.2 NC_001847.1 + 113682 0.66 0.552381
Target:  5'- -cUGGC--GGCgCUUGGCCGGCGCgGg -3'
miRNA:   3'- gaGCCGguCCGgGAGCCGGCUGUGgC- -5'
6459 5' -64.2 NC_001847.1 + 69123 0.66 0.552381
Target:  5'- uCUCGGCguacguGGUCUUUGGCgCGGCGuCCGc -3'
miRNA:   3'- -GAGCCGgu----CCGGGAGCCG-GCUGU-GGC- -5'
6459 5' -64.2 NC_001847.1 + 134924 0.66 0.552381
Target:  5'- --aGGcCCGGGCUCg-GGCCcccgGGCGCCGg -3'
miRNA:   3'- gagCC-GGUCCGGGagCCGG----CUGUGGC- -5'
6459 5' -64.2 NC_001847.1 + 89060 0.66 0.552381
Target:  5'- --gGGCCGGGCgCCU-GGCgGACguguuugcccACCGg -3'
miRNA:   3'- gagCCGGUCCG-GGAgCCGgCUG----------UGGC- -5'
6459 5' -64.2 NC_001847.1 + 74172 0.66 0.552381
Target:  5'- uCUCGGCgugGGGCCCaugCcGCgCGGCGCCu -3'
miRNA:   3'- -GAGCCGg--UCCGGGa--GcCG-GCUGUGGc -5'
6459 5' -64.2 NC_001847.1 + 74674 0.66 0.552381
Target:  5'- -cCGGCCGaGCCgCggcaggacggCGGCCGGCGCUu -3'
miRNA:   3'- gaGCCGGUcCGG-Ga---------GCCGGCUGUGGc -5'
6459 5' -64.2 NC_001847.1 + 93135 0.66 0.552381
Target:  5'- -cUGGCCGGGCU----GCCGGCGCCc -3'
miRNA:   3'- gaGCCGGUCCGGgagcCGGCUGUGGc -5'
6459 5' -64.2 NC_001847.1 + 124433 0.66 0.552381
Target:  5'- -cUGGC--GGCgCUUGGCCGGCGCgGg -3'
miRNA:   3'- gaGCCGguCCGgGAGCCGGCUGUGgC- -5'
6459 5' -64.2 NC_001847.1 + 103191 0.66 0.552381
Target:  5'- --aGGcCCGGGCUCg-GGCCcccgGGCGCCGg -3'
miRNA:   3'- gagCC-GGUCCGGGagCCGG----CUGUGGC- -5'
6459 5' -64.2 NC_001847.1 + 62202 0.66 0.552381
Target:  5'- -cCGGCCcauugAGGCCCgggUGGCgGAgguagcCGCCGu -3'
miRNA:   3'- gaGCCGG-----UCCGGGa--GCCGgCU------GUGGC- -5'
6459 5' -64.2 NC_001847.1 + 37304 0.66 0.552381
Target:  5'- aCUCGGCUcguaaGCgCCUCGGUCaGaACGCCGu -3'
miRNA:   3'- -GAGCCGGuc---CG-GGAGCCGG-C-UGUGGC- -5'
6459 5' -64.2 NC_001847.1 + 88657 0.66 0.543848
Target:  5'- gCUCGGCCacgcugcgacguggaAGGCCCUguacguaagugcccUGGC-GGCGCUGc -3'
miRNA:   3'- -GAGCCGG---------------UCCGGGA--------------GCCGgCUGUGGC- -5'
6459 5' -64.2 NC_001847.1 + 132270 0.66 0.542903
Target:  5'- -gCGGCgCGgcGGCCCgcgcgUCGGCCugGGCGCUGg -3'
miRNA:   3'- gaGCCG-GU--CCGGG-----AGCCGG--CUGUGGC- -5'
6459 5' -64.2 NC_001847.1 + 75229 0.66 0.542903
Target:  5'- --aGGCCAGGUCCUgGGa-GGCAaCCa -3'
miRNA:   3'- gagCCGGUCCGGGAgCCggCUGU-GGc -5'
6459 5' -64.2 NC_001847.1 + 68408 0.66 0.542903
Target:  5'- aCUCGGCCAGGUaag-GGUCGcCAaCCGg -3'
miRNA:   3'- -GAGCCGGUCCGggagCCGGCuGU-GGC- -5'
6459 5' -64.2 NC_001847.1 + 71245 0.66 0.542903
Target:  5'- uCUC-GCCucuGGCCgCgcCGGCCGAgCGCCGc -3'
miRNA:   3'- -GAGcCGGu--CCGG-Ga-GCCGGCU-GUGGC- -5'
6459 5' -64.2 NC_001847.1 + 28292 0.66 0.542903
Target:  5'- gUUGGCCAGGUCC-CGaacGCCGGCcaugaaAUCGg -3'
miRNA:   3'- gAGCCGGUCCGGGaGC---CGGCUG------UGGC- -5'
6459 5' -64.2 NC_001847.1 + 75399 0.66 0.542903
Target:  5'- -gCGGCCAGcgaGUCgagCUCGcGCCGgACGCCGa -3'
miRNA:   3'- gaGCCGGUC---CGG---GAGC-CGGC-UGUGGC- -5'
6459 5' -64.2 NC_001847.1 + 29454 0.66 0.542903
Target:  5'- -gCGGCCGcGG-CCUCuGCCGccaGCGCCGc -3'
miRNA:   3'- gaGCCGGU-CCgGGAGcCGGC---UGUGGC- -5'
6459 5' -64.2 NC_001847.1 + 58994 0.66 0.542903
Target:  5'- --gGGCCcGGCCCaaGuGCCGacccucGCACCGg -3'
miRNA:   3'- gagCCGGuCCGGGagC-CGGC------UGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.